RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 OR13C4Q8NGS5 318 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SLC7A13Q8TCU3 470 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TIFAQ96CG3 184 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 RNF38Q9H0F5 515 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 RSPH9Q9H1X1 276 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 FN3KQ9H479 309 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SERHL2Q9H4I8 314 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 A4GALTQ9NPC4 353 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ICAM5Q9UMF0 924 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 DGKBQ9Y6T7 804 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 KRBOX1C9JBD0 128 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ADAM11O75078 769 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 KAT7O95251 611 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 OR56A5P0C7T3 313 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZP3P21754 424 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 IGFBP6P24592 240 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ADCYAP1R1P41586 468 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 B4GALNT1Q00973 533 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 HSF2Q03933 536 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PYDC2Q56P42 97 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 LINGO4Q6UY18 593 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF621Q6ZSS3 439 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TSTD1Q8NFU3 115 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 FBXO30Q8TB52 745 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SPPL2AQ8TCT8 520 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 YIPF5Q969M3 257 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 FERD3LQ96RJ6 166 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PIP5K1AQ99755 562 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SGPP1Q9BX95 441 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ADAM29Q9UKF5 820 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SPATA2Q9UM82 520 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 MGAMO43451 1857 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 LYRM1O43325 122 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CLDN11O75508 207 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SLCO2B1O94956 709 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SERPINA1P01009 418 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SSTR4P31391 388 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 GABRA5P31644 462 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SOWAHCQ53LP3 525 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PABPC1L2AQ5JQF8 200 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NSUN5P2Q63ZY6 315 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 IZUMO1Q8IYV9 350 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 OR5M3Q8NGP4 307 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 DDOQ99489 341 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 USB1Q9BQ65 265 aaKnown RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NLNQ9BYT8 704 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 DPY30Q9C005 99 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF222Q9UK12 451 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 POMT2Q9UKY4 750 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CLIC1O00299 241 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TOR1AO14656 332 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 AQP8O94778 261 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 IL5P05113 134 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF865P0CJ78 1059 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 CEBPBP17676 345 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 GPM6BQ13491 265 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TAF13Q15543 124 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SYT14P1Q58G82 188 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SDHAF4Q5VUM1 108 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 TRIQKQ629K1 86 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 FAM166AQ6J272 317 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NOXRED1Q6NXP6 359 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PGBD2Q6P3X8 592 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SCIMPQ6UWF3 145 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 OR5M9Q8NGP3 310 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SMIM4Q8WVI0 70 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 SUSD6Q92537 303 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 KCNC2Q96PR1 638 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 NIPSNAP1Q9BPW8 284 aa5.07□□□□□ -1.6
SYNE1-220ENST00000471834 PURGQ9UJV8 347 aaKnown RBP5.07□□□□□ -1.6
SYNE1-220ENST00000471834 IRGMA1A4Y4 181 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 J3KR12 359 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HAX1O00165 279 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 LRATO95237 230 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MMP3P08254 477 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HNMTP50135 292 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MILR1Q7Z6M3 343 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GPSM1Q86YR5 675 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ANKRD53Q8N9V6 530 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 VPS37AQ8NEZ2 397 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 DIO2Q92813 273 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 NEURL3Q96EH8 262 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TRMT2BQ96GJ1 504 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SEMA3CQ99985 751 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GREB1Q4ZG55 1949 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 H3BN98 237 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 FAAHO00519 579 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 CASKO14936 926 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RFPL3O75679 317 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SYPP08247 313 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 C6P13671 934 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PSMA1P25786 263 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GTF2E2P29084 291 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SOX18P35713 384 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RACK1P63244 317 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MADCAM1Q13477 382 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MPPED2Q15777 294 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SLC8B1Q6J4K2 584 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 OTOP2Q7RTS6 562 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GALNT5Q7Z7M9 940 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms