RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W CHA4P43634 648 aa6.78□□□□□ -1.32
VPS28YPL065W PHO23P50947 330 aa6.78□□□□□ -1.32
VPS28YPL065W SRP1Q02821 542 aaKnown RBP6.78□□□□□ -1.32
VPS28YPL065W TDA5Q06417 326 aaKnown RBP6.78□□□□□ -1.32
VPS28YPL065W HSF1P10961 833 aa6.77□□□□□ -1.33
VPS28YPL065W ATG19P35193 415 aa6.77□□□□□ -1.33
VPS28YPL065W ECM21P38167 1117 aaKnown RBP6.77□□□□□ -1.33
VPS28YPL065W CCC2P38995 1004 aa6.77□□□□□ -1.33
VPS28YPL065W SUN4P53616 420 aa6.77□□□□□ -1.33
VPS28YPL065W SRT1Q03175 343 aa6.77□□□□□ -1.33
VPS28YPL065W HRQ1Q05549 1077 aa6.77□□□□□ -1.33
VPS28YPL065W ESC2Q06340 456 aa6.77□□□□□ -1.33
VPS28YPL065W SAH1P39954 449 aaKnown RBP6.76□□□□□ -1.33
VPS28YPL065W SPF1P39986 1215 aaKnown RBP6.76□□□□□ -1.33
VPS28YPL065W GIS1Q03833 894 aa6.76□□□□□ -1.33
VPS28YPL065W RPC82P32349 654 aa6.75□□□□□ -1.33
VPS28YPL065W ABD1P32783 436 aaPredicted RBP6.75□□□□□ -1.33
VPS28YPL065W DEF1P35732 738 aaKnown RBP6.75□□□□□ -1.33
VPS28YPL065W YKL151CP36059 337 aa6.75□□□□□ -1.33
VPS28YPL065W CDA1Q06702 301 aa6.75□□□□□ -1.33
VPS28YPL065W AIM44Q99299 758 aa6.75□□□□□ -1.33
VPS28YPL065W SPE1P08432 466 aa6.74□□□□□ -1.33
VPS28YPL065W SBA1P28707 216 aaKnown RBP6.74□□□□□ -1.33
VPS28YPL065W SRP40P32583 406 aaPredicted RBP6.74□□□□□ -1.33
VPS28YPL065W YJL049WP47048 450 aa6.74□□□□□ -1.33
VPS28YPL065W CTF4Q01454 927 aa6.74□□□□□ -1.33
VPS28YPL065W AGP1P25376 633 aa6.73□□□□□ -1.33
VPS28YPL065W SRP101P32916 621 aa6.73□□□□□ -1.33
VPS28YPL065W GIC1P38785 314 aa6.73□□□□□ -1.33
VPS28YPL065W EXG2P52911 562 aa6.73□□□□□ -1.33
VPS28YPL065W NSE3Q05541 303 aa6.73□□□□□ -1.33
VPS28YPL065W RAD4P14736 754 aa6.72□□□□□ -1.33
VPS28YPL065W PFK1P16861 987 aaKnown RBP6.72□□□□□ -1.33
VPS28YPL065W AIM39Q08223 395 aa6.72□□□□□ -1.33
VPS28YPL065W YKL091CP33324 310 aaKnown RBP6.71□□□□□ -1.34
VPS28YPL065W CDC53Q12018 815 aaKnown RBP6.71□□□□□ -1.34
VPS28YPL065W KCS1Q12494 1050 aa6.71□□□□□ -1.34
VPS28YPL065W TAD3Q9URQ3 322 aa6.71□□□□□ -1.34
VPS28YPL065W STE5P32917 917 aa6.7□□□□□ -1.34
VPS28YPL065W MSS4P38994 779 aa6.7□□□□□ -1.34
VPS28YPL065W HUL5P53119 910 aa6.7□□□□□ -1.34
VPS28YPL065W NAN1Q02931 896 aaKnown RBP6.7□□□□□ -1.34
VPS28YPL065W BDF2Q07442 638 aa6.7□□□□□ -1.34
VPS28YPL065W ENB1Q08299 606 aa6.7□□□□□ -1.34
VPS28YPL065W STI1P15705 589 aaKnown RBP RIP-Chip data6.69□□□□□ -1.34not detected
VPS28YPL065W CDC12P32468 407 aaKnown RBP6.69□□□□□ -1.34
VPS28YPL065W VBA5P36172 582 aa6.69□□□□□ -1.34
VPS28YPL065W YBR184WP38299 523 aa6.69□□□□□ -1.34
VPS28YPL065W URM1P40554 99 aaPredicted RBP6.69□□□□□ -1.34
VPS28YPL065W SLI1P53304 468 aa6.69□□□□□ -1.34
VPS28YPL065W FPR4Q06205 392 aaPredicted RBP6.69□□□□□ -1.34
VPS28YPL065W CHS7P38843 316 aa6.68□□□□□ -1.34
VPS28YPL065W TIM54P47045 478 aa6.68□□□□□ -1.34
VPS28YPL065W KIN4Q01919 800 aa6.68□□□□□ -1.34
VPS28YPL065W DUS3Q06053 668 aaKnown RBP6.68□□□□□ -1.34
VPS28YPL065W NPC2Q12408 173 aa6.68□□□□□ -1.34
VPS28YPL065W HRR25P29295 494 aaKnown RBP6.67□□□□□ -1.34
VPS28YPL065W YKR078WP36158 585 aaKnown RBP6.67□□□□□ -1.34
VPS28YPL065W SHE9Q04172 456 aa6.67□□□□□ -1.34
VPS28YPL065W YPR196WQ06595 470 aa6.67□□□□□ -1.34
VPS28YPL065W GUP2Q08929 609 aa6.67□□□□□ -1.34
VPS28YPL065W MBP1P39678 833 aa6.66□□□□□ -1.34
VPS28YPL065W GYP7P48365 746 aa6.66□□□□□ -1.34
VPS28YPL065W NCS6P53088 359 aa6.66□□□□□ -1.34
VPS28YPL065W CIT2P08679 460 aa6.64□□□□□ -1.35
VPS28YPL065W MRP8P35719 219 aa6.64□□□□□ -1.35
VPS28YPL065W PBP2P38151 413 aaKnown RBP RIP-Chip data6.64□□□□□ -1.35not detected
VPS28YPL065W YER158CP40095 573 aa6.64□□□□□ -1.35
VPS28YPL065W SFB2P53953 876 aa6.64□□□□□ -1.35
VPS28YPL065W RPN4Q03465 531 aa6.64□□□□□ -1.35
VPS28YPL065W YOR131CQ12486 218 aa6.64□□□□□ -1.35
VPS28YPL065W RAD53P22216 821 aa6.63□□□□□ -1.35
VPS28YPL065W RPL8BP29453 256 aaKnown RBP6.63□□□□□ -1.35
VPS28YPL065W SCT1P32784 759 aa6.63□□□□□ -1.35
VPS28YPL065W YHR020WP38708 688 aaKnown RBP6.63□□□□□ -1.35
VPS28YPL065W IRR1P40541 1150 aa6.63□□□□□ -1.35
VPS28YPL065W BUD6P41697 788 aa6.63□□□□□ -1.35
VPS28YPL065W GUS1P46655 708 aaKnown RBP RIP-Chip data6.63□□□□□ -1.35not detected
VPS28YPL065W TPO2P53283 614 aa6.63□□□□□ -1.35
VPS28YPL065W FMP25Q08023 583 aa6.63□□□□□ -1.35
VPS28YPL065W PPH3P32345 308 aa6.62□□□□□ -1.35
VPS28YPL065W NPP2P39997 493 aa6.62□□□□□ -1.35
VPS28YPL065W RAI1P53063 387 aaKnown RBP6.62□□□□□ -1.35
VPS28YPL065W RNH70P53331 553 aa6.62□□□□□ -1.35
VPS28YPL065W ADE8P04161 214 aa6.61□□□□□ -1.35
VPS28YPL065W CDC48P25694 835 aaKnown RBP6.61□□□□□ -1.35
VPS28YPL065W PBY1P38254 753 aa6.61□□□□□ -1.35
VPS28YPL065W PFD1P46988 109 aa6.61□□□□□ -1.35
VPS28YPL065W YGR125WP53273 1036 aa6.61□□□□□ -1.35
VPS28YPL065W YDR306CQ06640 478 aa6.61□□□□□ -1.35
VPS28YPL065W SPO75Q07798 868 aa6.61□□□□□ -1.35
VPS28YPL065W FLC1Q08967 793 aa6.61□□□□□ -1.35
VPS28YPL065W CAD1P24813 409 aaKnown RBP6.6□□□□□ -1.35
VPS28YPL065W SED4P25365 1065 aa6.6□□□□□ -1.35
VPS28YPL065W KAR4P25583 335 aa6.6□□□□□ -1.35
VPS28YPL065W VPS30Q02948 557 aa6.6□□□□□ -1.35
VPS28YPL065W WHI4Q07655 649 aaKnown RBP6.6□□□□□ -1.35
VPS28YPL065W PPM2Q08282 695 aa6.6□□□□□ -1.35
VPS28YPL065W OSH2Q12451 1283 aa6.6□□□□□ -1.35
VPS28YPL065W EFT1P32324 842 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 135.4 ms