RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 C1orf216Q8TAB5 229 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 AIDAQ96BJ3 306 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 FMNL2Q96PY5 1086 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 NACC1Q96RE7 527 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 ZIC5Q96T25 663 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 FAM117AQ9C073 453 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 C1orf115Q9H7X2 142 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 PRDM6Q9NQX0 595 aa4.5□□□□□ -1.69
VIM-210ENST00000637053 ADARB2-AS1A8MUL3 147 aa4.49□□□□□ -1.69
VIM-210ENST00000637053 MYCP01106 439 aaPredicted RBP4.49□□□□□ -1.69
VIM-210ENST00000637053 ALAS2P22557 587 aa4.49□□□□□ -1.69
VIM-210ENST00000637053 ARSJQ5FYB0 599 aaPredicted RBP4.49□□□□□ -1.69
VIM-210ENST00000637053 POLR3GLQ9BT43 218 aa4.49□□□□□ -1.69
VIM-210ENST00000637053 SSBP4Q9BWG4 385 aaPredicted RBP4.49□□□□□ -1.69
VIM-210ENST00000637053 MARK1Q9P0L2 795 aa4.49□□□□□ -1.69
VIM-210ENST00000637053 C9orf172C9J069 976 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 ELNP15502 786 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 SCNN1DP51172 638 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 NRG1Q02297 640 aaPredicted RBP4.48□□□□□ -1.69
VIM-210ENST00000637053 SHISA2Q6UWI4 295 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 C20orf204Q6ZNR8 217 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 TXNRD3Q86VQ6 643 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 TP53INP1Q96A56 240 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 KRTAP4-2Q9BYR5 136 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 CEP126Q9P2H0 1117 aa4.48□□□□□ -1.69
VIM-210ENST00000637053 RAD21O60216 631 aa4.47□□□□□ -1.69
VIM-210ENST00000637053 SIN3BO75182 1162 aa4.47□□□□□ -1.69
VIM-210ENST00000637053 YBX3P16989 372 aaKnown RBP eCLIP4.47□□□□□ -1.694e-7■□□□□ 10
VIM-210ENST00000637053 NEUROD2Q15784 382 aa4.47□□□□□ -1.69
VIM-210ENST00000637053 RGS22Q8NE09 1264 aa4.47□□□□□ -1.69
VIM-210ENST00000637053 NIFKQ9BYG3 293 aaKnown RBP4.47□□□□□ -1.69
VIM-210ENST00000637053 RNF112Q9ULX5 631 aa4.47□□□□□ -1.69
VIM-210ENST00000637053 USP3Q9Y6I4 520 aa4.47□□□□□ -1.69
VIM-210ENST00000637053 PAX4O43316 350 aa4.46□□□□□ -1.7
VIM-210ENST00000637053 TXKP42681 527 aa4.46□□□□□ -1.7
VIM-210ENST00000637053 SAMD5Q5TGI4 173 aa4.46□□□□□ -1.7
VIM-210ENST00000637053 TNFRSF25Q93038 417 aa4.46□□□□□ -1.7
VIM-210ENST00000637053 LENG1Q96BZ8 264 aaPredicted RBP4.46□□□□□ -1.7
VIM-210ENST00000637053 SLC30A3Q99726 388 aa4.46□□□□□ -1.7
VIM-210ENST00000637053 GPBP1L1Q9HC44 474 aaPredicted RBP4.46□□□□□ -1.7
VIM-210ENST00000637053 A0A0A0MRY4 1105 aa4.45□□□□□ -1.7
VIM-210ENST00000637053 INHAP05111 366 aa4.45□□□□□ -1.7
VIM-210ENST00000637053 LAMC2Q13753 1193 aa4.45□□□□□ -1.7
VIM-210ENST00000637053 TRAPPC3LQ5T215 181 aa4.45□□□□□ -1.7
VIM-210ENST00000637053 PHTF2Q8N3S3 785 aa4.45□□□□□ -1.7
VIM-210ENST00000637053 BCCIPQ9P287 314 aaKnown RBP eCLIP4.45□□□□□ -1.7
VIM-210ENST00000637053 IQSEC3Q9UPP2 1182 aaPredicted RBP4.45□□□□□ -1.7
VIM-210ENST00000637053 ADH7P40394 386 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 SMTNP53814 917 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 GDF10P55107 478 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 SFSWAPQ12872 951 aaKnown RBP4.44□□□□□ -1.7
VIM-210ENST00000637053 FZD5Q13467 585 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 TMEM259Q4ZIN3 620 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 KDM4CQ9H3R0 1056 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 ZDHHC3Q9NYG2 299 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 MTMR7Q9Y216 660 aa4.44□□□□□ -1.7
VIM-210ENST00000637053 TXLNAP40222 546 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 USP4Q13107 963 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 NBPF1Q3BBV0 1214 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 ILDR2Q71H61 639 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 RAB44Q7Z6P3 723 aaPredicted RBP4.43□□□□□ -1.7
VIM-210ENST00000637053 ZNF592Q92610 1267 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 PARP3Q9Y6F1 533 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 GJA3Q9Y6H8 435 aa4.43□□□□□ -1.7
VIM-210ENST00000637053 TATP17735 454 aaPredicted RBP4.42□□□□□ -1.7
VIM-210ENST00000637053 RBM25P49756 843 aaKnown RBP4.42□□□□□ -1.7
VIM-210ENST00000637053 C7orf43Q8WVR3 580 aa4.42□□□□□ -1.7
VIM-210ENST00000637053 ZNF428Q96B54 188 aa4.42□□□□□ -1.7
VIM-210ENST00000637053 DDRGK1Q96HY6 314 aa4.42□□□□□ -1.7
VIM-210ENST00000637053 PCMTD2Q9NV79 361 aa4.42□□□□□ -1.7
VIM-210ENST00000637053 SERTAD1Q9UHV2 236 aa4.42□□□□□ -1.7
VIM-210ENST00000637053 ZNF330Q9Y3S2 320 aaPredicted RBP4.42□□□□□ -1.7
VIM-210ENST00000637053 ARID3CA6NKF2 412 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 TMEM229AB2RXF0 380 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 TAL1P17542 331 aaPredicted RBP4.41□□□□□ -1.7
VIM-210ENST00000637053 MTFR1Q15390 333 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 LRRC69Q6ZNQ3 347 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 SLC4A9Q96Q91 983 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 CHIC2Q9UKJ5 165 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 DOLKQ9UPQ8 538 aa4.41□□□□□ -1.7
VIM-210ENST00000637053 A6NJY4 79 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 CDK2AP1O14519 115 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 LILRB5O75023 590 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 MED26O95402 600 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 SSTR4P31391 388 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 SPEM2Q0P670 501 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 OXLD1Q5BKU9 147 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 BICDL1Q6ZP65 573 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 ZDHHC1Q8WTX9 485 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 WFDC12Q8WWY7 111 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 FOXD4L4Q8WXT5 416 aaPredicted RBP4.4□□□□□ -1.71
VIM-210ENST00000637053 PKNOX2Q96KN3 472 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 CABP1Q9NZU7 370 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 USP21Q9UK80 565 aa4.4□□□□□ -1.71
VIM-210ENST00000637053 OAS3Q9Y6K5 1087 aaKnown RBP4.4□□□□□ -1.71
VIM-210ENST00000637053 APBB1O00213 710 aa4.39□□□□□ -1.71
VIM-210ENST00000637053 NOS3P29474 1203 aa4.39□□□□□ -1.71
VIM-210ENST00000637053 CD97P48960 835 aa4.39□□□□□ -1.71
VIM-210ENST00000637053 IRAK1P51617 712 aa4.39□□□□□ -1.71
VIM-210ENST00000637053 RAC1P63000 192 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms