RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 COL9A3Q14050 684 aaPredicted RBP17.99■□□□□ 0.47
CLN3-253ENST00000636977 ANKLE2Q86XL3 938 aa17.99■□□□□ 0.47
CLN3-253ENST00000636977 ANKRD24Q8TF21 1146 aa17.99■□□□□ 0.47
CLN3-253ENST00000636977 ADCK5Q3MIX3 580 aa17.98■□□□□ 0.47
CLN3-253ENST00000636977 C1orf141Q5JVX7 400 aa17.98■□□□□ 0.47
CLN3-253ENST00000636977 USP48Q86UV5 1035 aa17.98■□□□□ 0.47
CLN3-253ENST00000636977 ARHGEF25Q86VW2 580 aa17.98■□□□□ 0.47
CLN3-253ENST00000636977 KCNH5Q8NCM2 988 aa17.98■□□□□ 0.47
CLN3-253ENST00000636977 ZSCAN30Q86W11 494 aa17.98■□□□□ 0.47
CLN3-253ENST00000636977 KAZALD1Q96I82 304 aa17.97■□□□□ 0.47
CLN3-253ENST00000636977 TCHHQ07283 1943 aa17.97■□□□□ 0.47
CLN3-253ENST00000636977 CHD2O14647 1828 aaKnown RBP17.97■□□□□ 0.47
CLN3-253ENST00000636977 CASTP20810 708 aaKnown RBP17.97■□□□□ 0.47
CLN3-253ENST00000636977 SLC39A6Q13433 755 aa17.97■□□□□ 0.47
CLN3-253ENST00000636977 KSR2Q6VAB6 950 aa17.97■□□□□ 0.47
CLN3-253ENST00000636977 SUCLG2Q96I99 432 aa17.97■□□□□ 0.47
CLN3-253ENST00000636977 KIAA1211Q6ZU35 1233 aa17.96■□□□□ 0.47
CLN3-253ENST00000636977 CLASRPQ8N2M8 674 aaKnown RBP17.96■□□□□ 0.47
CLN3-253ENST00000636977 KLHDC4Q8TBB5 520 aa17.96■□□□□ 0.47
CLN3-253ENST00000636977 PDLIM2Q96JY6 352 aa17.96■□□□□ 0.47
CLN3-253ENST00000636977 DIAPH3Q9NSV4 1193 aa17.96■□□□□ 0.47
CLN3-253ENST00000636977 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.96■□□□□ 0.47
CLN3-253ENST00000636977 CNPY2Q9Y2B0 182 aa17.96■□□□□ 0.47
CLN3-253ENST00000636977 LMO7Q8WWI1 1683 aa17.96■□□□□ 0.46
CLN3-253ENST00000636977 GLRX3O76003 335 aaKnown RBP17.95■□□□□ 0.46
CLN3-253ENST00000636977 MTX1Q13505 466 aa17.95■□□□□ 0.46
CLN3-253ENST00000636977 PRPF40BQ6NWY9 871 aaKnown RBP17.95■□□□□ 0.46
CLN3-253ENST00000636977 AACSQ86V21 672 aa17.95■□□□□ 0.46
CLN3-253ENST00000636977 MBD3O95983 291 aa17.95■□□□□ 0.46
CLN3-253ENST00000636977 CCDC8Q9H0W5 538 aaPredicted RBP17.95■□□□□ 0.46
CLN3-253ENST00000636977 TLR7Q9NYK1 1049 aaKnown RBP17.95■□□□□ 0.46
CLN3-253ENST00000636977 USP42Q9H9J4 1324 aaKnown RBP17.95■□□□□ 0.46
CLN3-253ENST00000636977 HSP90AB4PQ58FF6 505 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 SIL1Q9H173 461 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 BICC1Q9H694 974 aaKnown RBP17.94■□□□□ 0.46
CLN3-253ENST00000636977 ECHDC1Q9NTX5 307 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 SASH1O94885 1247 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 AMOTQ4VCS5 1084 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 WDR33Q9C0J8 1336 aaKnown RBP17.94■□□□□ 0.46
CLN3-253ENST00000636977 IFIT2P09913 472 aaKnown RBP17.94■□□□□ 0.46
CLN3-253ENST00000636977 JARID2Q92833 1246 aaPredicted RBP17.94■□□□□ 0.46
CLN3-253ENST00000636977 FAM227BQ96M60 508 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 TTC41PQ6P2S7 1318 aa17.94■□□□□ 0.46
CLN3-253ENST00000636977 ADGRL3Q9HAR2 1447 aa17.93■□□□□ 0.46
CLN3-253ENST00000636977 SYT1P21579 422 aa17.93■□□□□ 0.46
CLN3-253ENST00000636977 PIP4K2AP48426 406 aaPredicted RBP17.93■□□□□ 0.46
CLN3-253ENST00000636977 EAF2Q96CJ1 260 aaPredicted RBP17.93■□□□□ 0.46
CLN3-253ENST00000636977 LIMCH1Q9UPQ0 1083 aa17.93■□□□□ 0.46
CLN3-253ENST00000636977 ZC3H6P61129 1189 aaKnown RBP17.93■□□□□ 0.46
CLN3-253ENST00000636977 PDIA6Q15084 440 aa17.93■□□□□ 0.46
CLN3-253ENST00000636977 JAKMIP1Q96N16 626 aaKnown RBP17.93■□□□□ 0.46
CLN3-253ENST00000636977 HEG1Q9ULI3 1381 aa17.93■□□□□ 0.46
CLN3-253ENST00000636977 ALDH1L1O75891 902 aa17.92■□□□□ 0.46
CLN3-253ENST00000636977 CCDC83Q8IWF9 413 aa17.92■□□□□ 0.46
CLN3-253ENST00000636977 HYPKQ9NX55 129 aa17.92■□□□□ 0.46
CLN3-253ENST00000636977 EPB41L2O43491 1005 aaKnown RBP17.92■□□□□ 0.46
CLN3-253ENST00000636977 MYL6BP14649 208 aa17.92■□□□□ 0.46
CLN3-253ENST00000636977 GRM8O00222 908 aa17.91■□□□□ 0.46
CLN3-253ENST00000636977 MSNP26038 577 aaKnown RBP17.91■□□□□ 0.46
CLN3-253ENST00000636977 CRYBG1Q9Y4K1 1723 aa17.91■□□□□ 0.46
CLN3-253ENST00000636977 IGKV5-2P06315 115 aa17.91■□□□□ 0.46
CLN3-253ENST00000636977 ST3GAL1Q11201 340 aa17.91■□□□□ 0.46
CLN3-253ENST00000636977 ZSCAN22P10073 491 aaPredicted RBP17.91■□□□□ 0.46
CLN3-253ENST00000636977 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
CLN3-253ENST00000636977 MPNDQ8N594 471 aa17.91■□□□□ 0.46
CLN3-253ENST00000636977 TAF6LQ9Y6J9 622 aa17.91■□□□□ 0.46
CLN3-253ENST00000636977 STX6O43752 255 aa17.9■□□□□ 0.46
CLN3-253ENST00000636977 NECAB1Q8N987 351 aa17.9■□□□□ 0.46
CLN3-253ENST00000636977 LINS1Q8NG48 757 aa17.9■□□□□ 0.46
CLN3-253ENST00000636977 TSPY26PQ9H489 355 aa17.9■□□□□ 0.46
CLN3-253ENST00000636977 NMIQ13287 307 aaPredicted RBP17.89■□□□□ 0.45
CLN3-253ENST00000636977 EPHA10Q5JZY3 1008 aa17.89■□□□□ 0.45
CLN3-253ENST00000636977 DDX17Q92841 729 aaKnown RBP17.89■□□□□ 0.45
CLN3-253ENST00000636977 TCEANC2Q96MN5 208 aa17.89■□□□□ 0.45
CLN3-253ENST00000636977 BOLA2Q9H3K6 86 aa17.89■□□□□ 0.45
CLN3-253ENST00000636977 PDRG1Q9NUG6 133 aa17.89■□□□□ 0.45
CLN3-253ENST00000636977 SMC3Q9UQE7 1217 aa17.89■□□□□ 0.45
CLN3-253ENST00000636977 EDC3Q96F86 508 aaKnown RBP17.89■□□□□ 0.45
CLN3-253ENST00000636977 NOL7Q9UMY1 257 aaKnown RBP17.89■□□□□ 0.45
CLN3-253ENST00000636977 FIBPO43427 364 aa17.88■□□□□ 0.45
CLN3-253ENST00000636977 GJB2P29033 226 aa17.88■□□□□ 0.45
CLN3-253ENST00000636977 NECTIN1Q15223 517 aa17.88■□□□□ 0.45
CLN3-253ENST00000636977 KRT28Q7Z3Y7 464 aa17.88■□□□□ 0.45
CLN3-253ENST00000636977 DDX21Q9NR30 783 aaKnown RBP eCLIP17.88■□□□□ 0.45
CLN3-253ENST00000636977 RBM8AQ9Y5S9 174 aaKnown RBP17.88■□□□□ 0.45
CLN3-253ENST00000636977 ME3Q16798 604 aa17.88■□□□□ 0.45
CLN3-253ENST00000636977 RIC3Q7Z5B4 369 aa17.88■□□□□ 0.45
CLN3-253ENST00000636977 BCL11BQ9C0K0 894 aaPredicted RBP17.88■□□□□ 0.45
CLN3-253ENST00000636977 A0A0D9SFI3 127 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 F13A1P00488 732 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 NFATC2IPQ8NCF5 419 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 RUFY2Q8WXA3 655 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 EVI5LQ96CN4 794 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 CHMP4AQ9BY43 222 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 NDUFB9Q9Y6M9 179 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 RGPD5Q99666 1765 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 CCDC171Q6TFL3 1326 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 NCAPD2Q15021 1401 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 CHGBP05060 677 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 G3BP1Q13283 466 aaKnown RBP eCLIP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms