RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TBC1D32Q96NH3 1257 aa19.14■□□□□ 0.65
CPSF1-213ENST00000620219 DLG5Q8TDM6 1919 aa19.14■□□□□ 0.65
CPSF1-213ENST00000620219 RAB11FIP3O75154 756 aa19.14■□□□□ 0.65
CPSF1-213ENST00000620219 TTC22Q5TAA0 569 aa19.13■□□□□ 0.65
CPSF1-213ENST00000620219 DZIP3Q86Y13 1208 aaKnown RBP19.13■□□□□ 0.65
CPSF1-213ENST00000620219 FOXD4L5Q5VV16 416 aaPredicted RBP19.13■□□□□ 0.65
CPSF1-213ENST00000620219 FOXD4L4Q8WXT5 416 aaPredicted RBP19.13■□□□□ 0.65
CPSF1-213ENST00000620219 PXDNQ92626 1479 aa19.13■□□□□ 0.65
CPSF1-213ENST00000620219 CEP126Q9P2H0 1117 aa19.12■□□□□ 0.65
CPSF1-213ENST00000620219 GCKRQ14397 625 aa19.12■□□□□ 0.65
CPSF1-213ENST00000620219 PLBD2Q8NHP8 589 aa19.12■□□□□ 0.65
CPSF1-213ENST00000620219 MEGF6O75095 1541 aa19.12■□□□□ 0.65
CPSF1-213ENST00000620219 DEKP35659 375 aaKnown RBP19.11■□□□□ 0.65
CPSF1-213ENST00000620219 NEURL1BA8MQ27 555 aa19.11■□□□□ 0.65
CPSF1-213ENST00000620219 TBC1D2Q9BYX2 928 aa19.11■□□□□ 0.65
CPSF1-213ENST00000620219 CEMIPQ8WUJ3 1361 aa19.1■□□□□ 0.65
CPSF1-213ENST00000620219 FKBP4Q02790 459 aaKnown RBP eCLIP19.1■□□□□ 0.65
CPSF1-213ENST00000620219 NFKBIBQ15653 356 aa19.1■□□□□ 0.65
CPSF1-213ENST00000620219 RUFY2Q8WXA3 655 aa19.1■□□□□ 0.65
CPSF1-213ENST00000620219 ZNF142P52746 1687 aaPredicted RBP19.1■□□□□ 0.65
CPSF1-213ENST00000620219 TOPAZ1Q8N9V7 1692 aa19.1■□□□□ 0.65
CPSF1-213ENST00000620219 ST18O60284 1047 aa19.1■□□□□ 0.65
CPSF1-213ENST00000620219 CDCA7Q9BWT1 371 aaPredicted RBP19.1■□□□□ 0.65
CPSF1-213ENST00000620219 NCLP19338 710 aaKnown RBP19.09■□□□□ 0.65
CPSF1-213ENST00000620219 IFIT5Q13325 482 aaKnown RBP19.09■□□□□ 0.65
CPSF1-213ENST00000620219 MPHOSPH8Q99549 860 aa19.09■□□□□ 0.65
CPSF1-213ENST00000620219 GSPT1P15170 499 aaKnown RBP19.08■□□□□ 0.65
CPSF1-213ENST00000620219 ZBTB1Q9Y2K1 713 aa19.08■□□□□ 0.65
CPSF1-213ENST00000620219 WASHC4Q2M389 1173 aa19.08■□□□□ 0.64
CPSF1-213ENST00000620219 METTL24Q5JXM2 366 aa19.08■□□□□ 0.64
CPSF1-213ENST00000620219 ZNF594Q96JF6 807 aaPredicted RBP19.08■□□□□ 0.64
CPSF1-213ENST00000620219 GZF1Q9H116 711 aaPredicted RBP19.08■□□□□ 0.64
CPSF1-213ENST00000620219 CPDO75976 1380 aa19.07■□□□□ 0.64
CPSF1-213ENST00000620219 ZPR1O75312 459 aa19.07■□□□□ 0.64
CPSF1-213ENST00000620219 GLRX3O76003 335 aaKnown RBP19.07■□□□□ 0.64
CPSF1-213ENST00000620219 UNC5CLQ8IV45 518 aa19.07■□□□□ 0.64
CPSF1-213ENST00000620219 NEK4P51957 841 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 NIP7Q9Y221 180 aaKnown RBP eCLIP19.06■□□□□ 0.64
CPSF1-213ENST00000620219 HEG1Q9ULI3 1381 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 KCNQ2O43526 872 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 LDHAL6AQ6ZMR3 332 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 VPS37DQ86XT2 251 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 SNRKQ9NRH2 765 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 NCAPD2Q15021 1401 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 HSP90AB3PQ58FF7 597 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 ECHDC1Q9NTX5 307 aa19.06■□□□□ 0.64
CPSF1-213ENST00000620219 FOXD4L6Q3SYB3 417 aaPredicted RBP19.06■□□□□ 0.64
CPSF1-213ENST00000620219 FOXD4L3Q6VB84 417 aaPredicted RBP19.06■□□□□ 0.64
CPSF1-213ENST00000620219 ATG3Q9NT62 314 aa19.05■□□□□ 0.64
CPSF1-213ENST00000620219 TTC39AQ5SRH9 613 aa19.04■□□□□ 0.64
CPSF1-213ENST00000620219 CCDC24Q8N4L8 307 aa19.04■□□□□ 0.64
CPSF1-213ENST00000620219 SMARCC1Q92922 1105 aaPredicted RBP19.04■□□□□ 0.64
CPSF1-213ENST00000620219 APPP05067 770 aa19.04■□□□□ 0.64
CPSF1-213ENST00000620219 HCLS1P14317 486 aaPredicted RBP19.04■□□□□ 0.64
CPSF1-213ENST00000620219 LOC102724428A0A0B4J2F2 783 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 IGKV5-2P06315 115 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 SIK1P57059 783 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 CERKQ8TCT0 537 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 NBPF26B4DH59 902 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 HSPA1LP34931 641 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 TFCP2Q12800 502 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 CCDC158Q5M9N0 1113 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 NBPF14Q5TI25 921 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 NBPF10Q6P3W6 841 aaKnown RBP19.03■□□□□ 0.64
CPSF1-213ENST00000620219 NBPF15Q8N660 670 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 SSH3Q8TE77 659 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 ZNF652Q9Y2D9 606 aa19.03■□□□□ 0.64
CPSF1-213ENST00000620219 HELBQ8NG08 1087 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-213ENST00000620219 UPF3BQ9BZI7 483 aaKnown RBP19.02■□□□□ 0.64
CPSF1-213ENST00000620219 NDUFB9Q9Y6M9 179 aa19.02■□□□□ 0.64
CPSF1-213ENST00000620219 NFAT5O94916 1531 aa19.02■□□□□ 0.64
CPSF1-213ENST00000620219 ZKSCAN1P17029 563 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-213ENST00000620219 TOMM22Q9NS69 142 aa19.02■□□□□ 0.64
CPSF1-213ENST00000620219 GNPATO15228 680 aa19.02■□□□□ 0.63
CPSF1-213ENST00000620219 IRS4O14654 1257 aaPredicted RBP19.01■□□□□ 0.63
CPSF1-213ENST00000620219 TIMM10P62072 90 aa19.01■□□□□ 0.63
CPSF1-213ENST00000620219 AK7Q96M32 723 aa19.01■□□□□ 0.63
CPSF1-213ENST00000620219 CCDC87Q9NVE4 849 aa19.01■□□□□ 0.63
CPSF1-213ENST00000620219 ADCY9O60503 1353 aa19.01■□□□□ 0.63
CPSF1-213ENST00000620219 ANKRD18BA2A2Z9 1011 aa19.01■□□□□ 0.63
CPSF1-213ENST00000620219 QTRT2Q9H974 415 aaKnown RBP19.01■□□□□ 0.63
CPSF1-213ENST00000620219 CCNL1Q9UK58 526 aaPredicted RBP19.01■□□□□ 0.63
CPSF1-213ENST00000620219 GOLGA6L22H0YM25 854 aa19■□□□□ 0.63
CPSF1-213ENST00000620219 HSP90B1P14625 803 aaKnown RBP19■□□□□ 0.63
CPSF1-213ENST00000620219 SMIM5Q71RC9 77 aa19■□□□□ 0.63
CPSF1-213ENST00000620219 DDX46Q7L014 1031 aaKnown RBP19■□□□□ 0.63
CPSF1-213ENST00000620219 CCDC191Q8NCU4 936 aa19■□□□□ 0.63
CPSF1-213ENST00000620219 KDM6AO15550 1401 aaPredicted RBP19■□□□□ 0.63
CPSF1-213ENST00000620219 LTN1O94822 1766 aa18.99■□□□□ 0.63
CPSF1-213ENST00000620219 TCIRG1Q13488 830 aa18.99■□□□□ 0.63
CPSF1-213ENST00000620219 EPHA10Q5JZY3 1008 aa18.99■□□□□ 0.63
CPSF1-213ENST00000620219 IFIT1P09914 478 aaKnown RBP18.98■□□□□ 0.63
CPSF1-213ENST00000620219 RFC4P35249 363 aa18.98■□□□□ 0.63
CPSF1-213ENST00000620219 COL5A2P05997 1499 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-213ENST00000620219 GOLIM4O00461 696 aa18.98■□□□□ 0.63
CPSF1-213ENST00000620219 KIF1AQ12756 1690 aa18.98■□□□□ 0.63
CPSF1-213ENST00000620219 CRKLP46109 303 aaKnown RBP18.98■□□□□ 0.63
CPSF1-213ENST00000620219 MARCH10Q8NA82 808 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-213ENST00000620219 CAMTA1Q9Y6Y1 1673 aa18.98■□□□□ 0.63
CPSF1-213ENST00000620219 RGS12O14924 1447 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms