RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	DLEC1	Q9Y238	1755 aa		33.06	■■■□□ 2.88
VEGFA-228	ENST00000617771	CCDC24	Q8N4L8	307 aa		33.04	■■■□□ 2.88
VEGFA-228	ENST00000617771	NBPF5P	Q86XG9	351 aa	Predicted RBP	33.03	■■■□□ 2.88
VEGFA-228	ENST00000617771	NGEF	Q8N5V2	710 aa		33.03	■■■□□ 2.88
VEGFA-228	ENST00000617771	ERBB4	Q15303	1308 aa		33.02	■■■□□ 2.88
VEGFA-228	ENST00000617771	NIP7	Q9Y221	180 aa	Known RBP eCLIP	33.02	■■■□□ 2.88
VEGFA-228	ENST00000617771	ANKRD31	Q8N7Z5	1873 aa		33.01	■■■□□ 2.88
VEGFA-228	ENST00000617771	C9orf131	Q5VYM1	1079 aa		33.01	■■■□□ 2.87
VEGFA-228	ENST00000617771	ZNF622	Q969S3	477 aa	Known RBP eCLIP	33.01	■■■□□ 2.87	3e-13	■□□□□ 10.7
VEGFA-228	ENST00000617771	MYL6B	P14649	208 aa		33	■■■□□ 2.87
VEGFA-228	ENST00000617771	KIF6	Q6ZMV9	814 aa		33	■■■□□ 2.87
VEGFA-228	ENST00000617771	TRIM35	Q9UPQ4	493 aa		33	■■■□□ 2.87
VEGFA-228	ENST00000617771	ERVV-1	B6SEH8	477 aa		32.99	■■■□□ 2.87
VEGFA-228	ENST00000617771	HLF	Q16534	295 aa		32.99	■■■□□ 2.87
VEGFA-228	ENST00000617771	TPTE2	Q6XPS3	522 aa		32.98	■■■□□ 2.87
VEGFA-228	ENST00000617771	MAP3K15	Q6ZN16	1313 aa		32.98	■■■□□ 2.87
VEGFA-228	ENST00000617771	LAS1L	Q9Y4W2	734 aa	Known RBP	32.96	■■■□□ 2.87
VEGFA-228	ENST00000617771	CHL1	O00533	1208 aa		32.95	■■■□□ 2.87
VEGFA-228	ENST00000617771	EIF2S2	P20042	333 aa	Known RBP	32.95	■■■□□ 2.87
VEGFA-228	ENST00000617771	TTLL7	Q6ZT98	887 aa		32.95	■■■□□ 2.87
VEGFA-228	ENST00000617771	RNF181	Q9P0P0	153 aa		32.95	■■■□□ 2.87
VEGFA-228	ENST00000617771	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.94	■■■□□ 2.86
VEGFA-228	ENST00000617771	COL11A2	P13942	1736 aa	Predicted RBP	32.94	■■■□□ 2.86
VEGFA-228	ENST00000617771	STYK1	Q6J9G0	422 aa		32.93	■■■□□ 2.86
VEGFA-228	ENST00000617771	CNKSR1	Q969H4	720 aa		32.93	■■■□□ 2.86
VEGFA-228	ENST00000617771	FAM177B	A6PVY3	158 aa		32.92	■■■□□ 2.86
VEGFA-228	ENST00000617771	SRGN	P10124	158 aa		32.92	■■■□□ 2.86
VEGFA-228	ENST00000617771	MASTL	Q96GX5	879 aa		32.92	■■■□□ 2.86
VEGFA-228	ENST00000617771	GTF2E1	P29083	439 aa	Predicted RBP	32.91	■■■□□ 2.86
VEGFA-228	ENST00000617771	RASSF7	Q02833	373 aa		32.91	■■■□□ 2.86
VEGFA-228	ENST00000617771	NYX	Q9GZU5	481 aa		32.91	■■■□□ 2.86
VEGFA-228	ENST00000617771	ZBTB3	Q9H5J0	574 aa		32.91	■■■□□ 2.86
VEGFA-228	ENST00000617771	APAF1	O14727	1248 aa		32.89	■■■□□ 2.86
VEGFA-228	ENST00000617771	SENP3-EIF4A1	A0A087X0R7	540 aa		32.88	■■■□□ 2.85
VEGFA-228	ENST00000617771	LMNB1	P20700	586 aa		32.88	■■■□□ 2.85
VEGFA-228	ENST00000617771	PDIA6	Q15084	440 aa		32.88	■■■□□ 2.85
VEGFA-228	ENST00000617771	C21orf2	O43822	256 aa		32.87	■■■□□ 2.85
VEGFA-228	ENST00000617771	CFAP44	Q96MT7	982 aa		32.87	■■■□□ 2.85
VEGFA-228	ENST00000617771	ZNF219	Q9P2Y4	722 aa	Predicted RBP	32.87	■■■□□ 2.85
VEGFA-228	ENST00000617771	KLRG2	A4D1S0	409 aa	Predicted RBP	32.86	■■■□□ 2.85
VEGFA-228	ENST00000617771	KIF3C	O14782	793 aa		32.86	■■■□□ 2.85
VEGFA-228	ENST00000617771	NPR1	P16066	1061 aa		32.86	■■■□□ 2.85
VEGFA-228	ENST00000617771	GIGYF2	Q6Y7W6	1299 aa	Known RBP	32.86	■■■□□ 2.85
VEGFA-228	ENST00000617771	LRP10	Q7Z4F1	713 aa		32.86	■■■□□ 2.85
VEGFA-228	ENST00000617771	NUP98	P52948	1817 aa		32.86	■■■□□ 2.85
VEGFA-228	ENST00000617771	ZC3H4	Q9UPT8	1303 aa	Known RBP	32.85	■■■□□ 2.85
VEGFA-228	ENST00000617771	SBF1	O95248	1867 aa		32.85	■■■□□ 2.85
VEGFA-228	ENST00000617771	CALD1	Q05682	793 aa	Known RBP	32.85	■■■□□ 2.85
VEGFA-228	ENST00000617771	PRPF40B	Q6NWY9	871 aa	Known RBP	32.85	■■■□□ 2.85
VEGFA-228	ENST00000617771	NECTIN2	Q92692	538 aa		32.85	■■■□□ 2.85
VEGFA-228	ENST00000617771	NFKBIE	O00221	500 aa		32.84	■■■□□ 2.85
VEGFA-228	ENST00000617771	HOXB7	P09629	217 aa		32.84	■■■□□ 2.85
VEGFA-228	ENST00000617771	GPT	P24298	496 aa		32.84	■■■□□ 2.85
VEGFA-228	ENST00000617771	KRT24	Q2M2I5	525 aa		32.84	■■■□□ 2.85
VEGFA-228	ENST00000617771	PROSER3	Q2NL68	480 aa		32.84	■■■□□ 2.85
VEGFA-228	ENST00000617771	SOGA3	Q5TF21	947 aa		32.84	■■■□□ 2.85
VEGFA-228	ENST00000617771	IBTK	Q9P2D0	1353 aa	Predicted RBP	32.83	■■■□□ 2.85
VEGFA-228	ENST00000617771	KDM2B	Q8NHM5	1336 aa		32.83	■■■□□ 2.85
VEGFA-228	ENST00000617771	ANXA1	P04083	346 aa		32.83	■■■□□ 2.85
VEGFA-228	ENST00000617771	ZNF34	Q8IZ26	560 aa		32.82	■■■□□ 2.84
VEGFA-228	ENST00000617771	UBN2	Q6ZU65	1347 aa		32.81	■■■□□ 2.84
VEGFA-228	ENST00000617771	DDX21	Q9NR30	783 aa	Known RBP eCLIP	32.81	■■■□□ 2.84
VEGFA-228	ENST00000617771	ANP32C	O43423	234 aa		32.8	■■■□□ 2.84
VEGFA-228	ENST00000617771	HDGFL1	Q5TGJ6	251 aa		32.8	■■■□□ 2.84
VEGFA-228	ENST00000617771	NUTM1	Q86Y26	1132 aa		32.8	■■■□□ 2.84
VEGFA-228	ENST00000617771	NMRK2	Q9NPI5	230 aa		32.8	■■■□□ 2.84
VEGFA-228	ENST00000617771	ARFGEF2	Q9Y6D5	1785 aa		32.8	■■■□□ 2.84
VEGFA-228	ENST00000617771	PRELP	P51888	382 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	CCDC184	Q52MB2	194 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	PARP10	Q53GL7	1025 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	COPS6	Q7L5N1	327 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	PPP1R42	Q7Z4L9	355 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	MBIP	Q9NS73	344 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	IFT57	Q9NWB7	429 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	SLX4	Q8IY92	1834 aa		32.79	■■■□□ 2.84
VEGFA-228	ENST00000617771	GNAI1	P63096	354 aa		32.78	■■■□□ 2.84
VEGFA-228	ENST00000617771	ERFE	Q4G0M1	354 aa		32.78	■■■□□ 2.84
VEGFA-228	ENST00000617771	SUSD4	Q5VX71	490 aa		32.78	■■■□□ 2.84
VEGFA-228	ENST00000617771	XAGE3	Q8WTP9	111 aa		32.78	■■■□□ 2.84
VEGFA-228	ENST00000617771	ABCC12	Q96J65	1359 aa		32.78	■■■□□ 2.84
VEGFA-228	ENST00000617771	LTBP3	Q9NS15	1303 aa		32.77	■■■□□ 2.84
VEGFA-228	ENST00000617771	ZNF853	P0CG23	659 aa		32.77	■■■□□ 2.84
VEGFA-228	ENST00000617771	ALDH1B1	P30837	517 aa		32.77	■■■□□ 2.84
VEGFA-228	ENST00000617771	AIMP1	Q12904	312 aa	Known RBP	32.77	■■■□□ 2.84
VEGFA-228	ENST00000617771	TAOK3	Q9H2K8	898 aa		32.77	■■■□□ 2.84
VEGFA-228	ENST00000617771	RIC1	Q4ADV7	1423 aa		32.77	■■■□□ 2.84
VEGFA-228	ENST00000617771	CACNA1S	Q13698	1873 aa		32.76	■■■□□ 2.84
VEGFA-228	ENST00000617771	HSP90AB3P	Q58FF7	597 aa		32.76	■■■□□ 2.83
VEGFA-228	ENST00000617771	CHPF2	Q9P2E5	772 aa		32.76	■■■□□ 2.83
VEGFA-228	ENST00000617771	DUSP27	Q5VZP5	1158 aa		32.75	■■■□□ 2.83
VEGFA-228	ENST00000617771	FER1L6	Q2WGJ9	1857 aa		32.75	■■■□□ 2.83
VEGFA-228	ENST00000617771	TOMM70	O94826	608 aa		32.74	■■■□□ 2.83
VEGFA-228	ENST00000617771	NTSR2	O95665	410 aa		32.74	■■■□□ 2.83
VEGFA-228	ENST00000617771	CRY2	Q49AN0	593 aa		32.74	■■■□□ 2.83
VEGFA-228	ENST00000617771	CCDC93	Q567U6	631 aa		32.74	■■■□□ 2.83
VEGFA-228	ENST00000617771	DBF4	Q9UBU7	674 aa	Predicted RBP	32.74	■■■□□ 2.83
VEGFA-228	ENST00000617771	TNRC6C	Q9HCJ0	1690 aa	Known RBP	32.74	■■■□□ 2.83
VEGFA-228	ENST00000617771	C7orf43	Q8WVR3	580 aa		32.73	■■■□□ 2.83
VEGFA-228	ENST00000617771	MRS2	Q9HD23	443 aa		32.73	■■■□□ 2.83
VEGFA-228	ENST00000617771	C16orf71	Q8IYS4	520 aa	Predicted RBP	32.72	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms