RNA–Protein interactions for RNA: ENST00000617585.1

ARHGEF1-223, Transcript of Rho guanine nucleotide exchange factor 1, human

TSL 2

Gene ARHGEF1, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF1-223	ENST00000617585	CNBD1	Q8NA66	436 aa		29.36	■■■□□ 2.29
ARHGEF1-223	ENST00000617585	GPBP1L1	Q9HC44	474 aa	Predicted RBP	29.35	■■■□□ 2.29
ARHGEF1-223	ENST00000617585	ERVV-1	B6SEH8	477 aa		29.34	■■■□□ 2.29
ARHGEF1-223	ENST00000617585	RRP7A	Q9Y3A4	280 aa	Known RBP	29.34	■■■□□ 2.29
ARHGEF1-223	ENST00000617585	CHL1	O00533	1208 aa		29.33	■■■□□ 2.29
ARHGEF1-223	ENST00000617585	ARFGEF2	Q9Y6D5	1785 aa		29.33	■■■□□ 2.29
ARHGEF1-223	ENST00000617585	ST5	P78524	1137 aa		29.32	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	HLF	Q16534	295 aa		29.32	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	NEUROD2	Q15784	382 aa		29.31	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	MAP3K15	Q6ZN16	1313 aa		29.3	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	LRP10	Q7Z4F1	713 aa		29.3	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	NIP7	Q9Y221	180 aa	Known RBP eCLIP	29.3	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	C9orf131	Q5VYM1	1079 aa		29.29	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	NBPF5P	Q86XG9	351 aa	Predicted RBP	29.29	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	CCDC24	Q8N4L8	307 aa		29.29	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	KLRG2	A4D1S0	409 aa	Predicted RBP	29.28	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	SRGN	P10124	158 aa		29.28	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	PDIA6	Q15084	440 aa		29.28	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	TPTE2	Q6XPS3	522 aa		29.28	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	FER1L6	Q2WGJ9	1857 aa		29.27	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	CCDC88A	Q3V6T2	1871 aa		29.27	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	STYK1	Q6J9G0	422 aa		29.27	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	TTLL7	Q6ZT98	887 aa		29.27	■■■□□ 2.28
ARHGEF1-223	ENST00000617585	MYL6B	P14649	208 aa		29.26	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	ZNF526	Q8TF50	670 aa	Predicted RBP	29.26	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	SLX4	Q8IY92	1834 aa		29.26	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	CACNA1S	Q13698	1873 aa		29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	ZNF316	A6NFI3	1004 aa	Predicted RBP	29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	NPHP1	O15259	732 aa		29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	KIF6	Q6ZMV9	814 aa		29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	NGEF	Q8N5V2	710 aa		29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	ZNF622	Q969S3	477 aa	Known RBP eCLIP	29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	MASTL	Q96GX5	879 aa		29.25	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	CNKSR1	Q969H4	720 aa		29.24	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	ZC3H4	Q9UPT8	1303 aa	Known RBP	29.23	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	KIF3C	O14782	793 aa		29.23	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	CFAP44	Q96MT7	982 aa		29.23	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	IBTK	Q9P2D0	1353 aa	Predicted RBP	29.23	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	DICER1	Q9UPY3	1922 aa	Known RBP	29.22	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	GIGYF2	Q6Y7W6	1299 aa	Known RBP	29.22	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	RNF181	Q9P0P0	153 aa		29.22	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	NFKBIE	O00221	500 aa		29.21	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	HOXB7	P09629	217 aa		29.21	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	EIF2S2	P20042	333 aa	Known RBP	29.21	■■■□□ 2.27
ARHGEF1-223	ENST00000617585	APAF1	O14727	1248 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	ZNF853	P0CG23	659 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	LMNB1	P20700	586 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	PRELP	P51888	382 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	RASSF7	Q02833	373 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	ZNF34	Q8IZ26	560 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	NYX	Q9GZU5	481 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	RIC1	Q4ADV7	1423 aa		29.2	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	PROSER3	Q2NL68	480 aa		29.19	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	ZBTB3	Q9H5J0	574 aa		29.19	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	NPR1	P16066	1061 aa		29.18	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	CCDC184	Q52MB2	194 aa		29.18	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	ANKRD36C	Q5JPF3	1778 aa		29.18	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	UBN2	Q6ZU65	1347 aa		29.18	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	LTBP3	Q9NS15	1303 aa		29.18	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	C21orf2	O43822	256 aa		29.17	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	KRT24	Q2M2I5	525 aa		29.17	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	PRPF40B	Q6NWY9	871 aa	Known RBP	29.17	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	DDX21	Q9NR30	783 aa	Known RBP eCLIP	29.17	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	LAS1L	Q9Y4W2	734 aa	Known RBP	29.17	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	TNRC6C	Q9HCJ0	1690 aa	Known RBP	29.17	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	C7orf43	Q8WVR3	580 aa		29.16	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	TIAM2	Q8IVF5	1701 aa		29.16	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	SOGA3	Q5TF21	947 aa		29.15	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	FAM177B	A6PVY3	158 aa		29.14	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	ANXA1	P04083	346 aa		29.14	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	CALD1	Q05682	793 aa	Known RBP	29.14	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	CRY2	Q49AN0	593 aa		29.14	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	MBIP	Q9NS73	344 aa		29.14	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	IFT57	Q9NWB7	429 aa		29.14	■■■□□ 2.26
ARHGEF1-223	ENST00000617585	ABCC12	Q96J65	1359 aa		29.13	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	GTF2E1	P29083	439 aa	Predicted RBP	29.13	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	PARP10	Q53GL7	1025 aa		29.13	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	SUSD4	Q5VX71	490 aa		29.13	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	KDM2B	Q8NHM5	1336 aa		29.13	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	COPS6	Q7L5N1	327 aa		29.12	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	NMRK2	Q9NPI5	230 aa		29.12	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	SENP3-EIF4A1	A0A087X0R7	540 aa		29.11	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	NTSR2	O95665	410 aa		29.11	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	GPT	P24298	496 aa		29.11	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	GNAI1	P63096	354 aa		29.11	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	ERFE	Q4G0M1	354 aa		29.11	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	NUTM1	Q86Y26	1132 aa		29.11	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	ALDH1B1	P30837	517 aa		29.1	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	PPP1R42	Q7Z4L9	355 aa		29.1	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	XAGE3	Q8WTP9	111 aa		29.1	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	TOMM70	O94826	608 aa		29.09	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	NCBP3	Q53F19	620 aa	Known RBP	29.09	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	HSP90AB3P	Q58FF7	597 aa		29.09	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	HDGFL1	Q5TGJ6	251 aa		29.09	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	NECTIN2	Q92692	538 aa		29.09	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	CHPF2	Q9P2E5	772 aa		29.09	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	HOXA10	P31260	410 aa	Predicted RBP	29.08	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	CCDC27	Q2M243	656 aa		29.08	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	DUSP27	Q5VZP5	1158 aa		29.08	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	TAOK3	Q9H2K8	898 aa		29.08	■■■□□ 2.25

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms