RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RNF181Q9P0P0 153 aa25.05■■□□□ 1.6
CCDC28A-203ENST00000617445 TSPYL4Q9UJ04 414 aa25.05■■□□□ 1.6
CCDC28A-203ENST00000617445 ERBB4Q15303 1308 aa25.05■■□□□ 1.6
CCDC28A-203ENST00000617445 ERVV-1B6SEH8 477 aa25.04■■□□□ 1.6
CCDC28A-203ENST00000617445 ZNF622Q969S3 477 aaKnown RBP eCLIP25.04■■□□□ 1.6
CCDC28A-203ENST00000617445 RUNDC1Q96C34 613 aa25.04■■□□□ 1.6
CCDC28A-203ENST00000617445 ZC3H4Q9UPT8 1303 aaKnown RBP25.04■■□□□ 1.6
CCDC28A-203ENST00000617445 KIF3CO14782 793 aa25.03■■□□□ 1.6
CCDC28A-203ENST00000617445 ZEB1P37275 1124 aaPredicted RBP25.03■■□□□ 1.6
CCDC28A-203ENST00000617445 STYK1Q6J9G0 422 aa25.03■■□□□ 1.6
CCDC28A-203ENST00000617445 CNKSR1Q969H4 720 aa25.03■■□□□ 1.6
CCDC28A-203ENST00000617445 NIP7Q9Y221 180 aaKnown RBP eCLIP25.03■■□□□ 1.6
CCDC28A-203ENST00000617445 LMNB1P20700 586 aa25.01■■□□□ 1.59
CCDC28A-203ENST00000617445 CCDC24Q8N4L8 307 aa25.01■■□□□ 1.59
CCDC28A-203ENST00000617445 MASTLQ96GX5 879 aa25.01■■□□□ 1.59
CCDC28A-203ENST00000617445 RRP7AQ9Y3A4 280 aaKnown RBP25.01■■□□□ 1.59
CCDC28A-203ENST00000617445 KDM2BQ8NHM5 1336 aa25.01■■□□□ 1.59
CCDC28A-203ENST00000617445 SRGNP10124 158 aa25■■□□□ 1.59
CCDC28A-203ENST00000617445 KIF6Q6ZMV9 814 aa25■■□□□ 1.59
CCDC28A-203ENST00000617445 HLFQ16534 295 aa24.99■■□□□ 1.59
CCDC28A-203ENST00000617445 MAP3K15Q6ZN16 1313 aa24.99■■□□□ 1.59
CCDC28A-203ENST00000617445 ADAMTS8Q9UP79 889 aa24.99■■□□□ 1.59
CCDC28A-203ENST00000617445 KLRG2A4D1S0 409 aaPredicted RBP24.98■■□□□ 1.59
CCDC28A-203ENST00000617445 SOGA3Q5TF21 947 aa24.98■■□□□ 1.59
CCDC28A-203ENST00000617445 CCDC146Q8IYE0 955 aa24.98■■□□□ 1.59
CCDC28A-203ENST00000617445 NGEFQ8N5V2 710 aa24.98■■□□□ 1.59
CCDC28A-203ENST00000617445 COL11A2P13942 1736 aaPredicted RBP24.98■■□□□ 1.59
CCDC28A-203ENST00000617445 TOMM70O94826 608 aa24.97■■□□□ 1.59
CCDC28A-203ENST00000617445 NEUROD2Q15784 382 aa24.97■■□□□ 1.59
CCDC28A-203ENST00000617445 NYXQ9GZU5 481 aa24.97■■□□□ 1.59
CCDC28A-203ENST00000617445 NUP98P52948 1817 aa24.97■■□□□ 1.59
CCDC28A-203ENST00000617445 MYL6BP14649 208 aa24.96■■□□□ 1.59
CCDC28A-203ENST00000617445 RASSF7Q02833 373 aa24.96■■□□□ 1.59
CCDC28A-203ENST00000617445 CHL1O00533 1208 aa24.95■■□□□ 1.58
CCDC28A-203ENST00000617445 C21orf2O43822 256 aa24.95■■□□□ 1.58
CCDC28A-203ENST00000617445 NPR1P16066 1061 aa24.95■■□□□ 1.58
CCDC28A-203ENST00000617445 GTF2E1P29083 439 aaPredicted RBP24.95■■□□□ 1.58
CCDC28A-203ENST00000617445 CCDC88AQ3V6T2 1871 aa24.95■■□□□ 1.58
CCDC28A-203ENST00000617445 NFKBIEO00221 500 aa24.94■■□□□ 1.58
CCDC28A-203ENST00000617445 HSPA6P17066 643 aa24.94■■□□□ 1.58
CCDC28A-203ENST00000617445 TTLL7Q6ZT98 887 aa24.94■■□□□ 1.58
CCDC28A-203ENST00000617445 NMRK2Q9NPI5 230 aa24.94■■□□□ 1.58
CCDC28A-203ENST00000617445 TRIM35Q9UPQ4 493 aa24.94■■□□□ 1.58
CCDC28A-203ENST00000617445 ARFGEF2Q9Y6D5 1785 aa24.93■■□□□ 1.58
CCDC28A-203ENST00000617445 LTBP3Q9NS15 1303 aa24.93■■□□□ 1.58
CCDC28A-203ENST00000617445 PRPF40BQ6NWY9 871 aaKnown RBP24.93■■□□□ 1.58
CCDC28A-203ENST00000617445 FER1L6Q2WGJ9 1857 aa24.93■■□□□ 1.58
CCDC28A-203ENST00000617445 SLX4Q8IY92 1834 aa24.93■■□□□ 1.58
CCDC28A-203ENST00000617445 EIF2S2P20042 333 aaKnown RBP24.92■■□□□ 1.58
CCDC28A-203ENST00000617445 GIGYF2Q6Y7W6 1299 aaKnown RBP24.92■■□□□ 1.58
CCDC28A-203ENST00000617445 IBTKQ9P2D0 1353 aaPredicted RBP24.92■■□□□ 1.58
CCDC28A-203ENST00000617445 PDIA6Q15084 440 aa24.91■■□□□ 1.58
CCDC28A-203ENST00000617445 C16orf71Q8IYS4 520 aaPredicted RBP24.91■■□□□ 1.58
CCDC28A-203ENST00000617445 FAM177BA6PVY3 158 aa24.9■■□□□ 1.58
CCDC28A-203ENST00000617445 ALDH1B1P30837 517 aa24.9■■□□□ 1.58
CCDC28A-203ENST00000617445 ZBTB3Q9H5J0 574 aa24.9■■□□□ 1.58
CCDC28A-203ENST00000617445 ZNF219Q9P2Y4 722 aaPredicted RBP24.9■■□□□ 1.58
CCDC28A-203ENST00000617445 DICER1Q9UPY3 1922 aaKnown RBP24.9■■□□□ 1.58
CCDC28A-203ENST00000617445 TNRC6CQ9HCJ0 1690 aaKnown RBP24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 GLTPD2A6NH11 291 aa24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 PRELPP51888 382 aa24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 LRP10Q7Z4F1 713 aa24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 ZNF34Q8IZ26 560 aa24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 RBM46Q8TBY0 533 aaKnown RBP24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 TAOK3Q9H2K8 898 aa24.89■■□□□ 1.58
CCDC28A-203ENST00000617445 CACNA1SQ13698 1873 aa24.89■■□□□ 1.57
CCDC28A-203ENST00000617445 HOXB7P09629 217 aa24.88■■□□□ 1.57
CCDC28A-203ENST00000617445 PARP10Q53GL7 1025 aa24.88■■□□□ 1.57
CCDC28A-203ENST00000617445 C7orf43Q8WVR3 580 aa24.88■■□□□ 1.57
CCDC28A-203ENST00000617445 LAS1LQ9Y4W2 734 aaKnown RBP24.88■■□□□ 1.57
CCDC28A-203ENST00000617445 DPY19L2Q6NUT2 758 aa24.87■■□□□ 1.57
CCDC28A-203ENST00000617445 PPP1R42Q7Z4L9 355 aa24.87■■□□□ 1.57
CCDC28A-203ENST00000617445 CFAP44Q96MT7 982 aa24.87■■□□□ 1.57
CCDC28A-203ENST00000617445 RRAGCQ9HB90 399 aa24.87■■□□□ 1.57
CCDC28A-203ENST00000617445 RIC1Q4ADV7 1423 aa24.86■■□□□ 1.57
CCDC28A-203ENST00000617445 CALD1Q05682 793 aaKnown RBP24.86■■□□□ 1.57
CCDC28A-203ENST00000617445 CRY2Q49AN0 593 aa24.86■■□□□ 1.57
CCDC28A-203ENST00000617445 CCDC93Q567U6 631 aa24.86■■□□□ 1.57
CCDC28A-203ENST00000617445 DDX21Q9NR30 783 aaKnown RBP eCLIP24.86■■□□□ 1.57
CCDC28A-203ENST00000617445 GPTP24298 496 aa24.85■■□□□ 1.57
CCDC28A-203ENST00000617445 FSTL1Q12841 308 aa24.85■■□□□ 1.57
CCDC28A-203ENST00000617445 ERFEQ4G0M1 354 aa24.85■■□□□ 1.57
CCDC28A-203ENST00000617445 HSP90AB3PQ58FF7 597 aa24.85■■□□□ 1.57
CCDC28A-203ENST00000617445 CEP350Q5VT06 3117 aa24.85■■□□□ 1.57
CCDC28A-203ENST00000617445 UBN2Q6ZU65 1347 aa24.85■■□□□ 1.57
CCDC28A-203ENST00000617445 TIAM2Q8IVF5 1701 aa24.84■■□□□ 1.57
CCDC28A-203ENST00000617445 VEGFAP15692 232 aaPredicted RBP24.84■■□□□ 1.57
CCDC28A-203ENST00000617445 SUSD4Q5VX71 490 aa24.84■■□□□ 1.57
CCDC28A-203ENST00000617445 NUTM1Q86Y26 1132 aa24.84■■□□□ 1.57
CCDC28A-203ENST00000617445 RTKN2Q8IZC4 609 aa24.84■■□□□ 1.57
CCDC28A-203ENST00000617445 APAF1O14727 1248 aa24.83■■□□□ 1.57
CCDC28A-203ENST00000617445 APLP1P51693 650 aa24.83■■□□□ 1.57
CCDC28A-203ENST00000617445 PROSER3Q2NL68 480 aa24.83■■□□□ 1.57
CCDC28A-203ENST00000617445 COPS6Q7L5N1 327 aa24.82■■□□□ 1.56
CCDC28A-203ENST00000617445 RNF123Q5XPI4 1314 aa24.82■■□□□ 1.56
CCDC28A-203ENST00000617445 ABCC12Q96J65 1359 aa24.81■■□□□ 1.56
CCDC28A-203ENST00000617445 NTSR2O95665 410 aa24.81■■□□□ 1.56
CCDC28A-203ENST00000617445 ANXA1P04083 346 aa24.81■■□□□ 1.56
CCDC28A-203ENST00000617445 HOXA10P31260 410 aaPredicted RBP24.81■■□□□ 1.56
CCDC28A-203ENST00000617445 CC2D2BQ6DHV5 1058 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms