RNA–Protein interactions for RNA: ENST00000614198.4

GGA3-221, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 3,438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-221ENST00000614198 SNRPA1P09661 255 aaKnown RBP12.29□□□□□ -0.44
GGA3-221ENST00000614198 CEP85Q6P2H3 762 aa12.29□□□□□ -0.44
GGA3-221ENST00000614198 HSP90AB1P08238 724 aaKnown RBP12.28□□□□□ -0.44
GGA3-221ENST00000614198 NRAPQ86VF7 1730 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 JCADQ9P266 1359 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 SEC24BO95487 1268 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 BEND3Q5T5X7 828 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 LRP10Q7Z4F1 713 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 DNAAF4Q8WXU2 420 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 EXOC6BQ9Y2D4 811 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 SLIT2O94813 1529 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 MCM4P33991 863 aa12.28□□□□□ -0.44
GGA3-221ENST00000614198 ERVV-2B6SEH9 535 aa12.27□□□□□ -0.44
GGA3-221ENST00000614198 TSHZ3Q63HK5 1081 aa12.27□□□□□ -0.44
GGA3-221ENST00000614198 ZBTB3Q9H5J0 574 aa12.27□□□□□ -0.44
GGA3-221ENST00000614198 ITGB4P16144 1822 aa12.27□□□□□ -0.44
GGA3-221ENST00000614198 ATP10DQ9P241 1426 aa12.27□□□□□ -0.45
GGA3-221ENST00000614198 HDAC1Q13547 482 aaPredicted RBP12.27□□□□□ -0.45
GGA3-221ENST00000614198 DDX21Q9NR30 783 aaKnown RBP eCLIP12.27□□□□□ -0.45
GGA3-221ENST00000614198 GLI3P10071 1580 aa12.27□□□□□ -0.45
GGA3-221ENST00000614198 RIC3Q7Z5B4 369 aa12.27□□□□□ -0.45
GGA3-221ENST00000614198 ISY1Q9ULR0 285 aaKnown RBP12.27□□□□□ -0.45
GGA3-221ENST00000614198 IGKV5-2P06315 115 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 TRIM44Q96DX7 344 aaPredicted RBP12.26□□□□□ -0.45
GGA3-221ENST00000614198 MYD88Q99836 296 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 ERBB4Q15303 1308 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 MRC1P22897 1456 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 SRCIN1Q9C0H9 1055 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 PRDM4Q9UKN5 801 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 KCPQ6ZWJ8 1503 aa12.26□□□□□ -0.45
GGA3-221ENST00000614198 CCT4P50991 539 aaKnown RBP12.25□□□□□ -0.45
GGA3-221ENST00000614198 AFF2P51816 1311 aa12.25□□□□□ -0.45
GGA3-221ENST00000614198 SMC5Q8IY18 1101 aa12.25□□□□□ -0.45
GGA3-221ENST00000614198 KLHDC4Q8TBB5 520 aa12.25□□□□□ -0.45
GGA3-221ENST00000614198 HOXB7P09629 217 aa12.24□□□□□ -0.45
GGA3-221ENST00000614198 KSR2Q6VAB6 950 aa12.24□□□□□ -0.45
GGA3-221ENST00000614198 GRPEL1Q9HAV7 217 aa12.24□□□□□ -0.45
GGA3-221ENST00000614198 TRAK2O60296 914 aa12.24□□□□□ -0.45
GGA3-221ENST00000614198 DOT1LQ8TEK3 1739 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 ANKRD13DQ6ZTN6 518 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 ANKRD44Q8N8A2 993 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 TBC1D2Q9BYX2 928 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 HYPKQ9NX55 129 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.23□□□□□ -0.45
GGA3-221ENST00000614198 GNAI2P04899 355 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 UBTFL1P0CB47 393 aaPredicted RBP12.23□□□□□ -0.45
GGA3-221ENST00000614198 CHD1LQ86WJ1 897 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 SYNE4Q8N205 404 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 FNBP4Q8N3X1 1017 aaPredicted RBP12.23□□□□□ -0.45
GGA3-221ENST00000614198 PA2G4Q9UQ80 394 aaKnown RBP12.23□□□□□ -0.45
GGA3-221ENST00000614198 NUCB1Q02818 461 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 EPHA10Q5JZY3 1008 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 KAZALD1Q96I82 304 aa12.23□□□□□ -0.45
GGA3-221ENST00000614198 BCL9O00512 1426 aa12.22□□□□□ -0.45
GGA3-221ENST00000614198 C9orf78Q9NZ63 289 aaPredicted RBP12.22□□□□□ -0.45
GGA3-221ENST00000614198 CACNA1FO60840 1977 aa12.22□□□□□ -0.45
GGA3-221ENST00000614198 PPP1R42Q7Z4L9 355 aa12.22□□□□□ -0.45
GGA3-221ENST00000614198 ZBTB1Q9Y2K1 713 aa12.22□□□□□ -0.45
GGA3-221ENST00000614198 TNS2Q63HR2 1409 aa12.22□□□□□ -0.45
GGA3-221ENST00000614198 TBC1D32Q96NH3 1257 aa12.21□□□□□ -0.45
GGA3-221ENST00000614198 IL1RAPL2Q9NP60 686 aa12.21□□□□□ -0.45
GGA3-221ENST00000614198 TBC1D2BQ9UPU7 963 aa12.21□□□□□ -0.45
GGA3-221ENST00000614198 PDIA4P13667 645 aaKnown RBP12.21□□□□□ -0.45
GGA3-221ENST00000614198 VPS72Q15906 364 aa12.21□□□□□ -0.45
GGA3-221ENST00000614198 SUCLG2Q96I99 432 aa12.21□□□□□ -0.45
GGA3-221ENST00000614198 CCDC85AQ96PX6 553 aaPredicted RBP12.21□□□□□ -0.45
GGA3-221ENST00000614198 WNK3Q9BYP7 1800 aa12.21□□□□□ -0.46
GGA3-221ENST00000614198 HLFQ16534 295 aa12.21□□□□□ -0.46
GGA3-221ENST00000614198 SRGAP3O43295 1099 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 ITPK1Q13572 414 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 UBR2Q8IWV8 1755 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 FAM177BA6PVY3 158 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 DCTPP1Q9H773 170 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 SOS1Q07889 1333 aaPredicted RBP12.2□□□□□ -0.46
GGA3-221ENST00000614198 NEURL1BA8MQ27 555 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 GPTP24298 496 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 UBE3BQ7Z3V4 1068 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 SIL1Q9H173 461 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 BICC1Q9H694 974 aaKnown RBP12.2□□□□□ -0.46
GGA3-221ENST00000614198 CHMP5Q9NZZ3 219 aa12.2□□□□□ -0.46
GGA3-221ENST00000614198 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.19□□□□□ -0.46
GGA3-221ENST00000614198 ATP6V1AP38606 617 aa12.19□□□□□ -0.46
GGA3-221ENST00000614198 GJD4Q96KN9 370 aaPredicted RBP12.19□□□□□ -0.46
GGA3-221ENST00000614198 QTRT2Q9H974 415 aaKnown RBP12.19□□□□□ -0.46
GGA3-221ENST00000614198 BARGINQ6ZT62 677 aa12.19□□□□□ -0.46
GGA3-221ENST00000614198 KIAA1211Q6ZU35 1233 aa12.19□□□□□ -0.46
GGA3-221ENST00000614198 THRAP3Q9Y2W1 955 aaKnown RBP12.19□□□□□ -0.46
GGA3-221ENST00000614198 MFAP1P55081 439 aaKnown RBP12.18□□□□□ -0.46
GGA3-221ENST00000614198 CYP19A1P11511 503 aaPredicted RBP12.18□□□□□ -0.46
GGA3-221ENST00000614198 TERF1P54274 439 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 AMIGO3Q86WK7 504 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 SPATA31A6Q5VVP1 1343 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 PAPPAQ13219 1627 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 GNAI3P08754 354 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 GCKRQ14397 625 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 RPAP2Q8IXW5 612 aaPredicted RBP12.18□□□□□ -0.46
GGA3-221ENST00000614198 MAP7D2Q96T17 732 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 METTL22Q9BUU2 404 aaPredicted RBP12.18□□□□□ -0.46
GGA3-221ENST00000614198 NWD2Q9ULI1 1742 aa12.18□□□□□ -0.46
GGA3-221ENST00000614198 DDX11L8A8MPP1 907 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms