RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 CCDC39Q9UFE4 941 aa26.77■■□□□ 1.88
POLR2J3-220ENST00000613744 SSH1Q8WYL5 1049 aa26.77■■□□□ 1.88
POLR2J3-220ENST00000613744 MBIPQ9NS73 344 aa26.77■■□□□ 1.88
POLR2J3-220ENST00000613744 TMOD3Q9NYL9 352 aa26.77■■□□□ 1.88
POLR2J3-220ENST00000613744 BTBD11A6QL63 1104 aa26.76■■□□□ 1.87
POLR2J3-220ENST00000613744 CD2BP2O95400 341 aaKnown RBP26.76■■□□□ 1.87
POLR2J3-220ENST00000613744 CYP2E1P05181 493 aaPredicted RBP26.76■■□□□ 1.87
POLR2J3-220ENST00000613744 UTP14CQ5TAP6 766 aaKnown RBP26.76■■□□□ 1.87
POLR2J3-220ENST00000613744 PIGBQ92521 554 aa26.76■■□□□ 1.87
POLR2J3-220ENST00000613744 KCNQ3O43525 872 aa26.75■■□□□ 1.87
POLR2J3-220ENST00000613744 RABEP1Q15276 862 aa26.75■■□□□ 1.87
POLR2J3-220ENST00000613744 TSPYL4Q9UJ04 414 aa26.75■■□□□ 1.87
POLR2J3-220ENST00000613744 EXOSC9Q06265 439 aaKnown RBP26.75■■□□□ 1.87
POLR2J3-220ENST00000613744 TMEM57Q8N5G2 664 aa26.75■■□□□ 1.87
POLR2J3-220ENST00000613744 LNPKQ9C0E8 428 aa26.74■■□□□ 1.87
POLR2J3-220ENST00000613744 CWC22Q9HCG8 908 aaKnown RBP26.74■■□□□ 1.87
POLR2J3-220ENST00000613744 LMBRD1Q9NUN5 540 aa26.74■■□□□ 1.87
POLR2J3-220ENST00000613744 ITGB4P16144 1822 aa26.74■■□□□ 1.87
POLR2J3-220ENST00000613744 ZNF853P0CG23 659 aa26.74■■□□□ 1.87
POLR2J3-220ENST00000613744 ALDH1L2Q3SY69 923 aa26.74■■□□□ 1.87
POLR2J3-220ENST00000613744 CHL1O00533 1208 aa26.73■■□□□ 1.87
POLR2J3-220ENST00000613744 RBSNQ9H1K0 784 aa26.73■■□□□ 1.87
POLR2J3-220ENST00000613744 NOB1Q9ULX3 412 aaKnown RBP26.73■■□□□ 1.87
POLR2J3-220ENST00000613744 FAM196AQ6ZSG2 479 aa26.72■■□□□ 1.87
POLR2J3-220ENST00000613744 TBC1D9Q6ZT07 1266 aa26.72■■□□□ 1.87
POLR2J3-220ENST00000613744 BRPF1P55201 1214 aaPredicted RBP26.71■■□□□ 1.87
POLR2J3-220ENST00000613744 SIPA1L3O60292 1781 aaPredicted RBP26.71■■□□□ 1.87
POLR2J3-220ENST00000613744 MRC1P22897 1456 aa26.71■■□□□ 1.87
POLR2J3-220ENST00000613744 CAVIN1Q6NZI2 390 aaKnown RBP26.7■■□□□ 1.87
POLR2J3-220ENST00000613744 ASAP1Q9ULH1 1129 aa26.7■■□□□ 1.87
POLR2J3-220ENST00000613744 CDC45O75419 566 aa26.7■■□□□ 1.86
POLR2J3-220ENST00000613744 KRT24Q2M2I5 525 aa26.7■■□□□ 1.86
POLR2J3-220ENST00000613744 ZNF428Q96B54 188 aa26.7■■□□□ 1.86
POLR2J3-220ENST00000613744 TRIM37O94972 964 aa26.69■■□□□ 1.86
POLR2J3-220ENST00000613744 MCTP1Q6DN14 999 aa26.69■■□□□ 1.86
POLR2J3-220ENST00000613744 BCL9O00512 1426 aa26.69■■□□□ 1.86
POLR2J3-220ENST00000613744 ELL2O00472 640 aaPredicted RBP26.69■■□□□ 1.86
POLR2J3-220ENST00000613744 FOXD4L1Q9NU39 408 aa26.69■■□□□ 1.86
POLR2J3-220ENST00000613744 CCDC94Q9BW85 323 aaPredicted RBP26.68■■□□□ 1.86
POLR2J3-220ENST00000613744 ZNF790Q6PG37 636 aa26.67■■□□□ 1.86
POLR2J3-220ENST00000613744 LRSAM1Q6UWE0 723 aa26.67■■□□□ 1.86
POLR2J3-220ENST00000613744 SBF2Q86WG5 1849 aa26.66■■□□□ 1.86
POLR2J3-220ENST00000613744 PTCD1O75127 700 aaKnown RBP26.66■■□□□ 1.86
POLR2J3-220ENST00000613744 ATG3Q9NT62 314 aa26.66■■□□□ 1.86
POLR2J3-220ENST00000613744 TTC5Q8N0Z6 440 aa26.65■■□□□ 1.86
POLR2J3-220ENST00000613744 TSPYL6Q8N831 410 aa26.65■■□□□ 1.86
POLR2J3-220ENST00000613744 DMTNQ08495 405 aa26.63■■□□□ 1.85
POLR2J3-220ENST00000613744 C8orf58Q8NAV2 365 aa26.63■■□□□ 1.85
POLR2J3-220ENST00000613744 RBM42Q9BTD8 480 aaKnown RBP26.62■■□□□ 1.85
POLR2J3-220ENST00000613744 NCLP19338 710 aaKnown RBP26.62■■□□□ 1.85
POLR2J3-220ENST00000613744 EIF4A1P60842 406 aaKnown RBP26.62■■□□□ 1.85
POLR2J3-220ENST00000613744 ANKRD45Q5TZF3 282 aa26.62■■□□□ 1.85
POLR2J3-220ENST00000613744 ZNF496Q96IT1 587 aaPredicted RBP26.62■■□□□ 1.85
POLR2J3-220ENST00000613744 KDM3BQ7LBC6 1761 aa26.61■■□□□ 1.85
POLR2J3-220ENST00000613744 NHSQ6T4R5 1651 aa26.61■■□□□ 1.85
POLR2J3-220ENST00000613744 PRAMEF22A3QJZ6 481 aa26.61■■□□□ 1.85
POLR2J3-220ENST00000613744 PRIMPOLQ96LW4 560 aa26.61■■□□□ 1.85
POLR2J3-220ENST00000613744 BCL11BQ9C0K0 894 aaPredicted RBP26.61■■□□□ 1.85
POLR2J3-220ENST00000613744 BABAM1Q9NWV8 329 aa26.61■■□□□ 1.85
POLR2J3-220ENST00000613744 MBD3O95983 291 aa26.6■■□□□ 1.85
POLR2J3-220ENST00000613744 TWISTNBQ3B726 338 aaPredicted RBP26.6■■□□□ 1.85
POLR2J3-220ENST00000613744 MYRIPQ8NFW9 859 aa26.6■■□□□ 1.85
POLR2J3-220ENST00000613744 ARHGAP45Q92619 1136 aa26.6■■□□□ 1.85
POLR2J3-220ENST00000613744 BTAF1O14981 1849 aa26.59■■□□□ 1.85
POLR2J3-220ENST00000613744 AK9Q5TCS8 1911 aa26.58■■□□□ 1.84
POLR2J3-220ENST00000613744 HMGN5P82970 282 aaKnown RBP26.58■■□□□ 1.84
POLR2J3-220ENST00000613744 KIAA2012Q0VF49 1180 aa26.58■■□□□ 1.84
POLR2J3-220ENST00000613744 KCNQ4P56696 695 aa26.57■■□□□ 1.84
POLR2J3-220ENST00000613744 GPT2Q8TD30 523 aa26.57■■□□□ 1.84
POLR2J3-220ENST00000613744 NECTIN2Q92692 538 aa26.57■■□□□ 1.84
POLR2J3-220ENST00000613744 ZBTB7BO15156 539 aaPredicted RBP26.56■■□□□ 1.84
POLR2J3-220ENST00000613744 PAPPAQ13219 1627 aa26.56■■□□□ 1.84
POLR2J3-220ENST00000613744 PALLDQ8WX93 1383 aa26.56■■□□□ 1.84
POLR2J3-220ENST00000613744 VAMP4O75379 141 aa26.56■■□□□ 1.84
POLR2J3-220ENST00000613744 GTF2F1P35269 517 aaKnown RBP eCLIP26.56■■□□□ 1.84
POLR2J3-220ENST00000613744 FMNL2Q96PY5 1086 aa26.56■■□□□ 1.84
POLR2J3-220ENST00000613744 GTPBP4Q9BZE4 634 aaKnown RBP26.55■■□□□ 1.84
POLR2J3-220ENST00000613744 KCPQ6ZWJ8 1503 aa26.54■■□□□ 1.84
POLR2J3-220ENST00000613744 ST18O60284 1047 aa26.54■■□□□ 1.84
POLR2J3-220ENST00000613744 PRPF40AO75400 957 aaKnown RBP26.54■■□□□ 1.84
POLR2J3-220ENST00000613744 SLC4A9Q96Q91 983 aa26.54■■□□□ 1.84
POLR2J3-220ENST00000613744 APBA3O96018 575 aa26.53■■□□□ 1.84
POLR2J3-220ENST00000613744 GIGYF1O75420 1035 aaPredicted RBP26.53■■□□□ 1.84
POLR2J3-220ENST00000613744 EIF2S2P20042 333 aaKnown RBP26.53■■□□□ 1.84
POLR2J3-220ENST00000613744 SMARCC1Q92922 1105 aaPredicted RBP26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 USP26Q9BXU7 913 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 UBR2Q8IWV8 1755 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 HEG1Q9ULI3 1381 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 LOC102724428A0A0B4J2F2 783 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 SIK1P57059 783 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 TMEM63CQ9P1W3 806 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 USP16Q9Y5T5 823 aa26.51■■□□□ 1.83
POLR2J3-220ENST00000613744 ZSCAN20P17040 1043 aaPredicted RBP26.5■■□□□ 1.83
POLR2J3-220ENST00000613744 SNRPA1P09661 255 aaKnown RBP26.5■■□□□ 1.83
POLR2J3-220ENST00000613744 INTS3Q68E01 1043 aaKnown RBP26.5■■□□□ 1.83
POLR2J3-220ENST00000613744 ILDR2Q71H61 639 aa26.5■■□□□ 1.83
POLR2J3-220ENST00000613744 KIF20AO95235 890 aa26.49■■□□□ 1.83
POLR2J3-220ENST00000613744 ATP6V1AP38606 617 aa26.49■■□□□ 1.83
POLR2J3-220ENST00000613744 SYAP1Q96A49 352 aaPredicted RBP26.49■■□□□ 1.83
POLR2J3-220ENST00000613744 UVSSAQ2YD98 709 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms