RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 TTC41PQ6P2S7 1318 aa20.84■□□□□ 0.93
NEK3-206ENST00000611833 SLC39A6Q13433 755 aa20.84■□□□□ 0.93
NEK3-206ENST00000611833 CWC27Q6UX04 472 aaKnown RBP20.84■□□□□ 0.93
NEK3-206ENST00000611833 LINS1Q8NG48 757 aa20.84■□□□□ 0.93
NEK3-206ENST00000611833 RAPGEF4Q8WZA2 1011 aa20.84■□□□□ 0.93
NEK3-206ENST00000611833 DDX17Q92841 729 aaKnown RBP20.84■□□□□ 0.93
NEK3-206ENST00000611833 PA2G4Q9UQ80 394 aaKnown RBP20.84■□□□□ 0.93
NEK3-206ENST00000611833 KDM6AO15550 1401 aaPredicted RBP20.84■□□□□ 0.93
NEK3-206ENST00000611833 AIMP1Q12904 312 aaKnown RBP20.83■□□□□ 0.93
NEK3-206ENST00000611833 ZNF790Q6PG37 636 aa20.83■□□□□ 0.93
NEK3-206ENST00000611833 NLRP2Q9NX02 1062 aa20.83■□□□□ 0.93
NEK3-206ENST00000611833 RBM27Q9P2N5 1060 aaKnown RBP20.83■□□□□ 0.93
NEK3-206ENST00000611833 SCN11AQ9UI33 1791 aa20.83■□□□□ 0.93
NEK3-206ENST00000611833 NPHP3Q7Z494 1330 aa20.83■□□□□ 0.92
NEK3-206ENST00000611833 KAZALD1Q96I82 304 aa20.83■□□□□ 0.92
NEK3-206ENST00000611833 C5P01031 1676 aa20.83■□□□□ 0.92
NEK3-206ENST00000611833 GRM8O00222 908 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 LSG1Q9H089 658 aaKnown RBP20.82■□□□□ 0.92
NEK3-206ENST00000611833 SLC52A2Q9HAB3 445 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 DIAPH3Q9NSV4 1193 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 ERC1Q8IUD2 1116 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 GPATCH3Q96I76 525 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 SUCLG2Q96I99 432 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 SNX14Q9Y5W7 946 aa20.82■□□□□ 0.92
NEK3-206ENST00000611833 UTYO14607 1347 aa20.81■□□□□ 0.92
NEK3-206ENST00000611833 DDX58O95786 925 aaKnown RBP20.81■□□□□ 0.92
NEK3-206ENST00000611833 IFIT2P09913 472 aaKnown RBP20.81■□□□□ 0.92
NEK3-206ENST00000611833 MEGF6O75095 1541 aa20.81■□□□□ 0.92
NEK3-206ENST00000611833 MBD3O95983 291 aa20.81■□□□□ 0.92
NEK3-206ENST00000611833 PHKG2P15735 406 aa20.81■□□□□ 0.92
NEK3-206ENST00000611833 PPP1R9BQ96SB3 815 aa20.81■□□□□ 0.92
NEK3-206ENST00000611833 ECHDC1Q9NTX5 307 aa20.81■□□□□ 0.92
NEK3-206ENST00000611833 NFATC2IPQ8NCF5 419 aa20.8■□□□□ 0.92
NEK3-206ENST00000611833 RUFY2Q8WXA3 655 aa20.8■□□□□ 0.92
NEK3-206ENST00000611833 SPG7Q9UQ90 795 aa20.8■□□□□ 0.92
NEK3-206ENST00000611833 ATF3P18847 181 aa20.79■□□□□ 0.92
NEK3-206ENST00000611833 BICC1Q9H694 974 aaKnown RBP20.79■□□□□ 0.92
NEK3-206ENST00000611833 COL18A1P39060 1754 aa20.79■□□□□ 0.92
NEK3-206ENST00000611833 ERBB4Q15303 1308 aa20.79■□□□□ 0.92
NEK3-206ENST00000611833 IGKV5-2P06315 115 aa20.79■□□□□ 0.92
NEK3-206ENST00000611833 TATP17735 454 aaPredicted RBP20.79■□□□□ 0.92
NEK3-206ENST00000611833 PRIM1P49642 420 aaKnown RBP20.79■□□□□ 0.92
NEK3-206ENST00000611833 TMEM94Q12767 1356 aa20.79■□□□□ 0.92
NEK3-206ENST00000611833 TMEM63CQ9P1W3 806 aa20.78■□□□□ 0.92
NEK3-206ENST00000611833 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.78■□□□□ 0.92
NEK3-206ENST00000611833 RASEFQ8IZ41 740 aa20.78■□□□□ 0.92
NEK3-206ENST00000611833 CABLES1Q8TDN4 633 aa20.78■□□□□ 0.92
NEK3-206ENST00000611833 RBSNQ9H1K0 784 aa20.78■□□□□ 0.92
NEK3-206ENST00000611833 NSFL1CQ9UNZ2 370 aaKnown RBP20.78■□□□□ 0.92
NEK3-206ENST00000611833 WDR33Q9C0J8 1336 aaKnown RBP20.78■□□□□ 0.92
NEK3-206ENST00000611833 MYL6BP14649 208 aa20.77■□□□□ 0.92
NEK3-206ENST00000611833 RIC3Q7Z5B4 369 aa20.77■□□□□ 0.92
NEK3-206ENST00000611833 AACSQ86V21 672 aa20.77■□□□□ 0.92
NEK3-206ENST00000611833 SASH1O94885 1247 aa20.77■□□□□ 0.92
NEK3-206ENST00000611833 FOXD4L6Q3SYB3 417 aaPredicted RBP20.77■□□□□ 0.92
NEK3-206ENST00000611833 FOXD4L3Q6VB84 417 aaPredicted RBP20.77■□□□□ 0.92
NEK3-206ENST00000611833 STRCP1A6NGW2 1772 aa20.76■□□□□ 0.91
NEK3-206ENST00000611833 SYCE3A1L190 88 aa20.76■□□□□ 0.91
NEK3-206ENST00000611833 G3BP1Q13283 466 aaKnown RBP eCLIP20.76■□□□□ 0.91
NEK3-206ENST00000611833 ZNF496Q96IT1 587 aaPredicted RBP20.76■□□□□ 0.91
NEK3-206ENST00000611833 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.76■□□□□ 0.914e-7■■■■□ 22.1
NEK3-206ENST00000611833 AK2P54819 239 aa20.76■□□□□ 0.91
NEK3-206ENST00000611833 LRSAM1Q6UWE0 723 aa20.76■□□□□ 0.91
NEK3-206ENST00000611833 IFNL2Q8IZJ0 200 aa20.76■□□□□ 0.91
NEK3-206ENST00000611833 TTC14Q96N46 770 aa20.76■□□□□ 0.91
NEK3-206ENST00000611833 LARP1Q6PKG0 1096 aaKnown RBP20.75■□□□□ 0.91
NEK3-206ENST00000611833 XAGE3Q8WTP9 111 aa20.75■□□□□ 0.91
NEK3-206ENST00000611833 EVI5LQ96CN4 794 aa20.75■□□□□ 0.91
NEK3-206ENST00000611833 LIMCH1Q9UPQ0 1083 aa20.75■□□□□ 0.91
NEK3-206ENST00000611833 CSB-PGBD3P0DP91 1061 aa20.75■□□□□ 0.91
NEK3-206ENST00000611833 CHRNA2Q15822 529 aa20.75■□□□□ 0.91
NEK3-206ENST00000611833 NAP1L5Q96NT1 182 aaPredicted RBP20.75■□□□□ 0.91
NEK3-206ENST00000611833 NEURL1BA8MQ27 555 aa20.74■□□□□ 0.91
NEK3-206ENST00000611833 CASTP20810 708 aaKnown RBP20.74■□□□□ 0.91
NEK3-206ENST00000611833 COPS6Q7L5N1 327 aa20.74■□□□□ 0.91
NEK3-206ENST00000611833 EAF2Q96CJ1 260 aaPredicted RBP20.74■□□□□ 0.91
NEK3-206ENST00000611833 DCCP43146 1447 aa20.74■□□□□ 0.91
NEK3-206ENST00000611833 CYP27B1O15528 508 aa20.73■□□□□ 0.91
NEK3-206ENST00000611833 LARP6Q9BRS8 491 aaKnown RBP20.73■□□□□ 0.91
NEK3-206ENST00000611833 ABCC6O95255 1503 aa20.73■□□□□ 0.91
NEK3-206ENST00000611833 NEXNQ0ZGT2 675 aa20.73■□□□□ 0.91
NEK3-206ENST00000611833 RUFY3Q7L099 469 aa20.73■□□□□ 0.91
NEK3-206ENST00000611833 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.73■□□□□ 0.91
NEK3-206ENST00000611833 MRC1P22897 1456 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 PTH1RQ03431 593 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 GCKRQ14397 625 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 LRP10Q7Z4F1 713 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 SYAP1Q96A49 352 aaPredicted RBP20.72■□□□□ 0.91
NEK3-206ENST00000611833 USP16Q9Y5T5 823 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 TNS3Q68CZ2 1445 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 PRPF40BQ6NWY9 871 aaKnown RBP20.72■□□□□ 0.91
NEK3-206ENST00000611833 MYD88Q99836 296 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 METTL22Q9BUU2 404 aaPredicted RBP20.72■□□□□ 0.91
NEK3-206ENST00000611833 SIL1Q9H173 461 aa20.72■□□□□ 0.91
NEK3-206ENST00000611833 CPA1P15085 419 aa20.71■□□□□ 0.91
NEK3-206ENST00000611833 KLHDC4Q8TBB5 520 aa20.71■□□□□ 0.91
NEK3-206ENST00000611833 DCAF5Q96JK2 942 aa20.71■□□□□ 0.91
NEK3-206ENST00000611833 CCDC8Q9H0W5 538 aaPredicted RBP20.71■□□□□ 0.91
NEK3-206ENST00000611833 GDPD2Q9HCC8 539 aa20.71■□□□□ 0.91
NEK3-206ENST00000611833 PIP4K2AP48426 406 aaPredicted RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms