RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 IL6STP40189 918 aaPredicted RBP22.53■■□□□ 1.2
VRK3-225ENST00000601912 CWF19L2Q2TBE0 894 aaKnown RBP22.53■■□□□ 1.2
VRK3-225ENST00000601912 CEP85Q6P2H3 762 aa22.53■■□□□ 1.2
VRK3-225ENST00000601912 CCDC87Q9NVE4 849 aa22.53■■□□□ 1.2
VRK3-225ENST00000601912 ZBTB1Q9Y2K1 713 aa22.53■■□□□ 1.2
VRK3-225ENST00000601912 IBTKQ9P2D0 1353 aaPredicted RBP22.53■■□□□ 1.2
VRK3-225ENST00000601912 BTAF1O14981 1849 aa22.53■■□□□ 1.2
VRK3-225ENST00000601912 ITPK1Q13572 414 aa22.52■■□□□ 1.2
VRK3-225ENST00000601912 CICQ96RK0 1608 aaPredicted RBP22.52■■□□□ 1.2
VRK3-225ENST00000601912 SBF2Q86WG5 1849 aa22.52■■□□□ 1.2
VRK3-225ENST00000601912 HMMRO75330 724 aa22.52■■□□□ 1.2
VRK3-225ENST00000601912 CRKLP46109 303 aaKnown RBP22.52■■□□□ 1.2
VRK3-225ENST00000601912 ZNF831Q5JPB2 1677 aa22.52■■□□□ 1.2
VRK3-225ENST00000601912 BRWD3Q6RI45 1802 aa22.52■■□□□ 1.2
VRK3-225ENST00000601912 SIRT2Q8IXJ6 389 aa22.52■■□□□ 1.2
VRK3-225ENST00000601912 NEURL1BA8MQ27 555 aa22.51■■□□□ 1.19
VRK3-225ENST00000601912 IGKV5-2P06315 115 aa22.51■■□□□ 1.19
VRK3-225ENST00000601912 ZBTB3Q9H5J0 574 aa22.51■■□□□ 1.19
VRK3-225ENST00000601912 LRRFIP2Q9Y608 721 aaKnown RBP22.51■■□□□ 1.19
VRK3-225ENST00000601912 NBPF7P0C2Y1 421 aaPredicted RBP22.5■■□□□ 1.19
VRK3-225ENST00000601912 SMC5Q8IY18 1101 aa22.5■■□□□ 1.19
VRK3-225ENST00000601912 GCC1Q96CN9 775 aa22.5■■□□□ 1.19
VRK3-225ENST00000601912 ARXQ96QS3 562 aa22.5■■□□□ 1.19
VRK3-225ENST00000601912 ARFGEF2Q9Y6D5 1785 aa22.5■■□□□ 1.19
VRK3-225ENST00000601912 GRM8O00222 908 aa22.49■■□□□ 1.19
VRK3-225ENST00000601912 INTS5Q6P9B9 1019 aaKnown RBP22.49■■□□□ 1.19
VRK3-225ENST00000601912 GCKRQ14397 625 aa22.49■■□□□ 1.19
VRK3-225ENST00000601912 RGS17Q9UGC6 210 aaPredicted RBP22.48■■□□□ 1.19
VRK3-225ENST00000601912 UTYO14607 1347 aa22.47■■□□□ 1.19
VRK3-225ENST00000601912 MAP3K15Q6ZN16 1313 aa22.47■■□□□ 1.19
VRK3-225ENST00000601912 CCNL1Q9UK58 526 aaPredicted RBP22.47■■□□□ 1.19
VRK3-225ENST00000601912 ATP5J2-PTCD1G3V325 749 aa22.46■■□□□ 1.19
VRK3-225ENST00000601912 EIF5P55010 431 aaKnown RBP22.46■■□□□ 1.19
VRK3-225ENST00000601912 ATP8B2P98198 1209 aa22.46■■□□□ 1.19
VRK3-225ENST00000601912 LINC00116Q8NCU8 138 aa22.46■■□□□ 1.19
VRK3-225ENST00000601912 PDZRN3Q9UPQ7 1066 aa22.46■■□□□ 1.19
VRK3-225ENST00000601912 NUP188Q5SRE5 1749 aa22.45■■□□□ 1.19
VRK3-225ENST00000601912 TCIRG1Q13488 830 aa22.45■■□□□ 1.18
VRK3-225ENST00000601912 HSP90AB3PQ58FF7 597 aa22.45■■□□□ 1.18
VRK3-225ENST00000601912 DZIP3Q86Y13 1208 aaKnown RBP22.45■■□□□ 1.18
VRK3-225ENST00000601912 DCTPP1Q9H773 170 aa22.45■■□□□ 1.18
VRK3-225ENST00000601912 CNTNAP4Q9C0A0 1308 aa22.44■■□□□ 1.18
VRK3-225ENST00000601912 ERVV-1B6SEH8 477 aa22.44■■□□□ 1.18
VRK3-225ENST00000601912 TRIM37O94972 964 aa22.44■■□□□ 1.18
VRK3-225ENST00000601912 CCDC191Q8NCU4 936 aa22.44■■□□□ 1.18
VRK3-225ENST00000601912 CWC25Q9NXE8 425 aaPredicted RBP22.44■■□□□ 1.18
VRK3-225ENST00000601912 RREB1Q92766 1687 aa22.44■■□□□ 1.18
VRK3-225ENST00000601912 RC3H1Q5TC82 1133 aaKnown RBP22.43■■□□□ 1.18
VRK3-225ENST00000601912 POTEAQ6S8J7 498 aa22.43■■□□□ 1.18
VRK3-225ENST00000601912 GIGYF2Q6Y7W6 1299 aaKnown RBP22.43■■□□□ 1.18
VRK3-225ENST00000601912 COL5A3P25940 1745 aaPredicted RBP22.43■■□□□ 1.18
VRK3-225ENST00000601912 A0A087WZG4 1122 aa22.42■■□□□ 1.18
VRK3-225ENST00000601912 TBC1D2BQ9UPU7 963 aa22.42■■□□□ 1.18
VRK3-225ENST00000601912 KCNQ4P56696 695 aa22.42■■□□□ 1.18
VRK3-225ENST00000601912 ISCA1Q9BUE6 129 aa22.42■■□□□ 1.18
VRK3-225ENST00000601912 AFDNP55196 1824 aaKnown RBP22.42■■□□□ 1.18
VRK3-225ENST00000601912 RGS3P49796 1198 aa22.41■■□□□ 1.18
VRK3-225ENST00000601912 NUCB1Q02818 461 aa22.41■■□□□ 1.18
VRK3-225ENST00000601912 TRIM28Q13263 835 aaKnown RBP22.41■■□□□ 1.18
VRK3-225ENST00000601912 SKAP1Q86WV1 359 aa22.41■■□□□ 1.18
VRK3-225ENST00000601912 ZBTB47Q9UFB7 747 aaPredicted RBP22.41■■□□□ 1.18
VRK3-225ENST00000601912 LY75O60449 1722 aa22.41■■□□□ 1.18
VRK3-225ENST00000601912 MYH14Q7Z406 1995 aaKnown RBP22.41■■□□□ 1.18
VRK3-225ENST00000601912 PPP1R42Q7Z4L9 355 aa22.4■■□□□ 1.18
VRK3-225ENST00000601912 PNMA6EA0A0J9YXQ4 647 aa22.39■■□□□ 1.18
VRK3-225ENST00000601912 HMGB2P26583 209 aaKnown RBP22.39■■□□□ 1.18
VRK3-225ENST00000601912 ANKRD45Q5TZF3 282 aa22.39■■□□□ 1.18
VRK3-225ENST00000601912 SSH3Q8TE77 659 aa22.39■■□□□ 1.18
VRK3-225ENST00000601912 SUCLG2Q96I99 432 aa22.39■■□□□ 1.18
VRK3-225ENST00000601912 COL15A1P39059 1388 aa22.39■■□□□ 1.17
VRK3-225ENST00000601912 SRGAP3O43295 1099 aa22.39■■□□□ 1.17
VRK3-225ENST00000601912 MTX1Q13505 466 aa22.39■■□□□ 1.17
VRK3-225ENST00000601912 HLFQ16534 295 aa22.39■■□□□ 1.17
VRK3-225ENST00000601912 UBE3BQ7Z3V4 1068 aa22.39■■□□□ 1.17
VRK3-225ENST00000601912 CHD1LQ86WJ1 897 aa22.39■■□□□ 1.17
VRK3-225ENST00000601912 H7C1W4 665 aa22.38■■□□□ 1.17
VRK3-225ENST00000601912 SLC27A3Q5K4L6 730 aa22.38■■□□□ 1.17
VRK3-225ENST00000601912 RPS6KA4O75676 772 aa22.36■■□□□ 1.17
VRK3-225ENST00000601912 POLA2Q14181 598 aa22.36■■□□□ 1.17
VRK3-225ENST00000601912 BICC1Q9H694 974 aaKnown RBP22.36■■□□□ 1.17
VRK3-225ENST00000601912 KAZALD1Q96I82 304 aa22.36■■□□□ 1.17
VRK3-225ENST00000601912 ZNF652Q9Y2D9 606 aa22.36■■□□□ 1.17
VRK3-225ENST00000601912 GNPATO15228 680 aa22.35■■□□□ 1.17
VRK3-225ENST00000601912 CAMTA2O94983 1202 aa22.35■■□□□ 1.17
VRK3-225ENST00000601912 CASP7P55210 303 aa22.35■■□□□ 1.17
VRK3-225ENST00000601912 LNPKQ9C0E8 428 aa22.35■■□□□ 1.17
VRK3-225ENST00000601912 RTCBQ9Y3I0 505 aaKnown RBP22.35■■□□□ 1.17
VRK3-225ENST00000601912 JARID2Q92833 1246 aaPredicted RBP22.34■■□□□ 1.17
VRK3-225ENST00000601912 GPTP24298 496 aa22.33■■□□□ 1.17
VRK3-225ENST00000601912 NLRP10Q86W26 655 aa22.33■■□□□ 1.17
VRK3-225ENST00000601912 AK7Q96M32 723 aa22.33■■□□□ 1.17
VRK3-225ENST00000601912 NUP98P52948 1817 aa22.33■■□□□ 1.17
VRK3-225ENST00000601912 RGL2O15211 777 aa22.33■■□□□ 1.16
VRK3-225ENST00000601912 PCCAP05165 728 aaPredicted RBP22.33■■□□□ 1.16
VRK3-225ENST00000601912 HSP90AB4PQ58FF6 505 aa22.33■■□□□ 1.16
VRK3-225ENST00000601912 ZNF34Q8IZ26 560 aa22.33■■□□□ 1.16
VRK3-225ENST00000601912 ZBTB38Q8NAP3 1195 aaPredicted RBP22.33■■□□□ 1.16
VRK3-225ENST00000601912 LRRC4BQ9NT99 713 aa22.33■■□□□ 1.16
VRK3-225ENST00000601912 EXOC6BQ9Y2D4 811 aa22.33■■□□□ 1.16
VRK3-225ENST00000601912 TAF1LQ8IZX4 1826 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms