RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 FOXR1Q6PIV2 292 aa6.78□□□□□ -1.32
CKS1BP3-201ENST00000600888 RHPN1Q8TCX5 695 aa6.78□□□□□ -1.32
CKS1BP3-201ENST00000600888 COL26A1Q96A83 441 aa6.78□□□□□ -1.32
CKS1BP3-201ENST00000600888 KLRG1Q96E93 195 aa6.78□□□□□ -1.32
CKS1BP3-201ENST00000600888 ZCCHC2Q9C0B9 1178 aaKnown RBP6.78□□□□□ -1.32
CKS1BP3-201ENST00000600888 PTCD1O75127 700 aaKnown RBP6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 RTN1Q16799 776 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 PHLDB3Q6NSJ2 640 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 CAPN12Q6ZSI9 719 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 MKNK1Q9BUB5 465 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 QTRT2Q9H974 415 aaKnown RBP6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 NEUROD4Q9HD90 331 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 GJA3Q9Y6H8 435 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 BICRAQ9NZM4 1560 aa6.77□□□□□ -1.33
CKS1BP3-201ENST00000600888 GPR25O00155 361 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 FIGNL1Q6PIW4 674 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 LRRC69Q6ZNQ3 347 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 MYO19Q96H55 970 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 SUSD3Q96L08 255 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 ANKIB1Q9P2G1 1089 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 PCDHGC4Q9Y5F7 938 aa6.76□□□□□ -1.33
CKS1BP3-201ENST00000600888 BNIP3LO60238 219 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 GMPRP36959 345 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 SCNN1AP37088 669 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 NAA30Q147X3 362 aaPredicted RBP6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 ZNF280CQ8ND82 737 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 TRERF1Q96PN7 1200 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 CFHR5Q9BXR6 569 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 NDFIP2Q9NV92 336 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 KLK14Q9P0G3 267 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 LRFN2Q9ULH4 789 aa6.75□□□□□ -1.33
CKS1BP3-201ENST00000600888 ATXN7O15265 892 aaPredicted RBP6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 DGKZQ13574 1117 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 HIF1AQ16665 826 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 C11orf91Q3C1V1 193 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 COX20Q5RI15 118 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 SAMD5Q5TGI4 173 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 C16orf46Q6P387 395 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 HSH2DQ96JZ2 352 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 COL25A1Q9BXS0 654 aaPredicted RBP6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 SAP130Q9H0E3 1048 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 SEPT3Q9UH03 358 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 PHF24Q9UPV7 400 aa6.74□□□□□ -1.33
CKS1BP3-201ENST00000600888 B4GALNT3Q6L9W6 998 aa6.73□□□□□ -1.33
CKS1BP3-201ENST00000600888 ABHD17AQ96GS6 310 aa6.73□□□□□ -1.33
CKS1BP3-201ENST00000600888 BCS1LQ9Y276 419 aa6.73□□□□□ -1.33
CKS1BP3-201ENST00000600888 SHROOM4Q9ULL8 1493 aa6.73□□□□□ -1.33
CKS1BP3-201ENST00000600888 FAM157BP0CG42 384 aa6.72□□□□□ -1.33
CKS1BP3-201ENST00000600888 KRT76Q01546 638 aa6.72□□□□□ -1.33
CKS1BP3-201ENST00000600888 TNP2Q05952 138 aa6.72□□□□□ -1.33
CKS1BP3-201ENST00000600888 GAS6Q14393 721 aa6.72□□□□□ -1.33
CKS1BP3-201ENST00000600888 RNFT1Q5M7Z0 435 aa6.72□□□□□ -1.33
CKS1BP3-201ENST00000600888 ATXN7L1Q9ULK2 861 aaPredicted RBP6.72□□□□□ -1.33
CKS1BP3-201ENST00000600888 DCDC2BA2VCK2 349 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 KHNYNO15037 678 aaKnown RBP6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 MAPTP10636 758 aaKnown RBP6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 BTLAQ7Z6A9 289 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 IFT43Q96FT9 208 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 CEP63Q96MT8 703 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 CNTNAP3BQ96NU0 1288 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 CNTNAP3Q9BZ76 1288 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 DMGDHQ9UI17 866 aaKnown RBP6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 HCN2Q9UL51 889 aa6.71□□□□□ -1.34
CKS1BP3-201ENST00000600888 TGFBR3LH3BV60 316 aa6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 EFSO43281 561 aa6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 FGFR3P22607 806 aa6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 BRD2P25440 801 aaKnown RBP6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 ARID4AP29374 1257 aaPredicted RBP6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 IER5Q5VY09 327 aa6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 GTF3C2Q8WUA4 911 aaPredicted RBP6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 TRAIPQ9BWF2 469 aa6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 MTMR7Q9Y216 660 aa6.7□□□□□ -1.34
CKS1BP3-201ENST00000600888 TNFRSF10BO14763 440 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 WIPF1O43516 503 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 MICAL2O94851 1124 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 BRD1O95696 1058 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 MX2P20592 715 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 CTBSQ01459 385 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 TYRO3Q06418 890 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 LAMC2Q13753 1193 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 STRN4Q9NRL3 753 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 MBIPQ9NS73 344 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 STIM2Q9P246 746 aa6.69□□□□□ -1.34
CKS1BP3-201ENST00000600888 SRSF11Q05519 484 aaKnown RBP6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 SFSWAPQ12872 951 aaKnown RBP6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 FAM26DQ5JW98 314 aa6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 ETFBKMTQ8IXQ9 262 aa6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 HELQQ8TDG4 1101 aa6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 BRD7Q9NPI1 651 aa6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 MARK1Q9P0L2 795 aa6.68□□□□□ -1.34
CKS1BP3-201ENST00000600888 C2CD2LO14523 706 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 OPLAHO14841 1288 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 CD33P20138 364 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 INPP5BP32019 993 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 IDH3AP50213 366 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 KCNQ4P56696 695 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 FAM182BQ5T319 152 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 TXNDC2Q86VQ3 553 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 TREML1Q86YW5 311 aa6.67□□□□□ -1.34
CKS1BP3-201ENST00000600888 NSFL1CQ9UNZ2 370 aaKnown RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms