RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 CLEC4GQ6UXB4 293 aa24.76■■□□□ 1.55
PNKP-213ENST00000599543 LMNB1P20700 586 aa24.75■■□□□ 1.55
PNKP-213ENST00000599543 RALBP1Q15311 655 aa24.75■■□□□ 1.55
PNKP-213ENST00000599543 C16orf71Q8IYS4 520 aaPredicted RBP24.75■■□□□ 1.55
PNKP-213ENST00000599543 ZC3H4Q9UPT8 1303 aaKnown RBP24.75■■□□□ 1.55
PNKP-213ENST00000599543 NBPF26B4DH59 902 aa24.74■■□□□ 1.55
PNKP-213ENST00000599543 NBPF10Q6P3W6 841 aaKnown RBP24.74■■□□□ 1.55
PNKP-213ENST00000599543 NBPF15Q8N660 670 aa24.74■■□□□ 1.55
PNKP-213ENST00000599543 ARFGEF2Q9Y6D5 1785 aa24.74■■□□□ 1.55
PNKP-213ENST00000599543 FER1L6Q2WGJ9 1857 aa24.74■■□□□ 1.55
PNKP-213ENST00000599543 NBPF5PQ86XG9 351 aaPredicted RBP24.73■■□□□ 1.55
PNKP-213ENST00000599543 SLX4Q8IY92 1834 aa24.71■■□□□ 1.55
PNKP-213ENST00000599543 RGL2O15211 777 aa24.71■■□□□ 1.55
PNKP-213ENST00000599543 THUMPD2Q9BTF0 503 aaKnown RBP24.71■■□□□ 1.55
PNKP-213ENST00000599543 DICER1Q9UPY3 1922 aaKnown RBP24.71■■□□□ 1.55
PNKP-213ENST00000599543 NFKBIEO00221 500 aa24.7■■□□□ 1.54
PNKP-213ENST00000599543 ZNF219Q9P2Y4 722 aaPredicted RBP24.7■■□□□ 1.54
PNKP-213ENST00000599543 NIP7Q9Y221 180 aaKnown RBP eCLIP24.7■■□□□ 1.54
PNKP-213ENST00000599543 C21orf2O43822 256 aa24.69■■□□□ 1.54
PNKP-213ENST00000599543 STYK1Q6J9G0 422 aa24.69■■□□□ 1.54
PNKP-213ENST00000599543 RBM46Q8TBY0 533 aaKnown RBP24.69■■□□□ 1.54
PNKP-213ENST00000599543 CNKSR1Q969H4 720 aa24.69■■□□□ 1.54
PNKP-213ENST00000599543 NUP98P52948 1817 aa24.68■■□□□ 1.54
PNKP-213ENST00000599543 SRGNP10124 158 aa24.68■■□□□ 1.54
PNKP-213ENST00000599543 PRELPP51888 382 aa24.68■■□□□ 1.54
PNKP-213ENST00000599543 EIF4A1P60842 406 aaKnown RBP24.68■■□□□ 1.54
PNKP-213ENST00000599543 RRAGCQ9HB90 399 aa24.68■■□□□ 1.54
PNKP-213ENST00000599543 APLP1P51693 650 aa24.67■■□□□ 1.54
PNKP-213ENST00000599543 TPTE2Q6XPS3 522 aa24.67■■□□□ 1.54
PNKP-213ENST00000599543 MASTLQ96GX5 879 aa24.67■■□□□ 1.54
PNKP-213ENST00000599543 PRPF40BQ6NWY9 871 aaKnown RBP24.66■■□□□ 1.54
PNKP-213ENST00000599543 HLFQ16534 295 aa24.65■■□□□ 1.54
PNKP-213ENST00000599543 NGEFQ8N5V2 710 aa24.65■■□□□ 1.54
PNKP-213ENST00000599543 MYBBP1AQ9BQG0 1328 aaKnown RBP24.64■■□□□ 1.54
PNKP-213ENST00000599543 GLTPD2A6NH11 291 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 FAM177BA6PVY3 158 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 RIPK4P57078 832 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 SOGA3Q5TF21 947 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 KIF6Q6ZMV9 814 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 TAOK3Q9H2K8 898 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 TSPYL4Q9UJ04 414 aa24.64■■□□□ 1.54
PNKP-213ENST00000599543 WDR90Q96KV7 1748 aa24.64■■□□□ 1.53
PNKP-213ENST00000599543 RRP7AQ9Y3A4 280 aaKnown RBP24.63■■□□□ 1.53
PNKP-213ENST00000599543 LTBP3Q9NS15 1303 aa24.62■■□□□ 1.53
PNKP-213ENST00000599543 MYL6BP14649 208 aa24.62■■□□□ 1.53
PNKP-213ENST00000599543 NPR1P16066 1061 aa24.62■■□□□ 1.53
PNKP-213ENST00000599543 GTF2E1P29083 439 aaPredicted RBP24.62■■□□□ 1.53
PNKP-213ENST00000599543 LMOD3Q0VAK6 560 aa24.62■■□□□ 1.53
PNKP-213ENST00000599543 FSTL1Q12841 308 aa24.62■■□□□ 1.53
PNKP-213ENST00000599543 ERVV-1B6SEH8 477 aa24.61■■□□□ 1.53
PNKP-213ENST00000599543 ERFEQ4G0M1 354 aa24.61■■□□□ 1.53
PNKP-213ENST00000599543 MAP3K15Q6ZN16 1313 aa24.61■■□□□ 1.53
PNKP-213ENST00000599543 DPY19L2Q6NUT2 758 aa24.6■■□□□ 1.53
PNKP-213ENST00000599543 KLRG2A4D1S0 409 aaPredicted RBP24.59■■□□□ 1.53
PNKP-213ENST00000599543 VEGFAP15692 232 aaPredicted RBP24.59■■□□□ 1.53
PNKP-213ENST00000599543 TMPOP42166 694 aaKnown RBP24.59■■□□□ 1.53
PNKP-213ENST00000599543 NYXQ9GZU5 481 aa24.59■■□□□ 1.53
PNKP-213ENST00000599543 ERBB4Q15303 1308 aa24.59■■□□□ 1.53
PNKP-213ENST00000599543 TTLL7Q6ZT98 887 aa24.58■■□□□ 1.53
PNKP-213ENST00000599543 SMC1BQ8NDV3 1235 aa24.58■■□□□ 1.53
PNKP-213ENST00000599543 CCDC93Q567U6 631 aa24.57■■□□□ 1.52
PNKP-213ENST00000599543 ZBTB3Q9H5J0 574 aa24.57■■□□□ 1.52
PNKP-213ENST00000599543 WDR43Q15061 677 aaKnown RBP eCLIP24.56■■□□□ 1.52
PNKP-213ENST00000599543 CCDC146Q8IYE0 955 aa24.56■■□□□ 1.52
PNKP-213ENST00000599543 BABAM1Q9NWV8 329 aa24.56■■□□□ 1.52
PNKP-213ENST00000599543 ABCC12Q96J65 1359 aa24.54■■□□□ 1.52
PNKP-213ENST00000599543 IBTKQ9P2D0 1353 aaPredicted RBP24.54■■□□□ 1.52
PNKP-213ENST00000599543 EIF2S2P20042 333 aaKnown RBP24.54■■□□□ 1.52
PNKP-213ENST00000599543 GPTP24298 496 aa24.54■■□□□ 1.52
PNKP-213ENST00000599543 NEUROD2Q15784 382 aa24.54■■□□□ 1.52
PNKP-213ENST00000599543 NUTM1Q86Y26 1132 aa24.54■■□□□ 1.52
PNKP-213ENST00000599543 C7orf43Q8WVR3 580 aa24.54■■□□□ 1.52
PNKP-213ENST00000599543 ALDH1B1P30837 517 aa24.53■■□□□ 1.52
PNKP-213ENST00000599543 RUNDC1Q96C34 613 aa24.52■■□□□ 1.52
PNKP-213ENST00000599543 UBN2Q6ZU65 1347 aa24.52■■□□□ 1.52
PNKP-213ENST00000599543 CRY2Q49AN0 593 aa24.51■■□□□ 1.51
PNKP-213ENST00000599543 GIGYF2Q6Y7W6 1299 aaKnown RBP24.51■■□□□ 1.51
PNKP-213ENST00000599543 ANKRD36CQ5JPF3 1778 aa24.51■■□□□ 1.51
PNKP-213ENST00000599543 RIC1Q4ADV7 1423 aa24.51■■□□□ 1.51
PNKP-213ENST00000599543 PCNTO95613 3336 aa24.5■■□□□ 1.51
PNKP-213ENST00000599543 FKBP4Q02790 459 aaKnown RBP eCLIP24.5■■□□□ 1.51
PNKP-213ENST00000599543 RTKN2Q8IZC4 609 aa24.5■■□□□ 1.51
PNKP-213ENST00000599543 DNAJC5GQ8N7S2 189 aa24.5■■□□□ 1.51
PNKP-213ENST00000599543 HTRA3P83110 453 aa24.49■■□□□ 1.51
PNKP-213ENST00000599543 PDIA6Q15084 440 aa24.49■■□□□ 1.51
PNKP-213ENST00000599543 SUSD4Q5VX71 490 aa24.49■■□□□ 1.51
PNKP-213ENST00000599543 ZNF34Q8IZ26 560 aa24.49■■□□□ 1.51
PNKP-213ENST00000599543 RPGRQ92834 1020 aaKnown RBP24.49■■□□□ 1.51
PNKP-213ENST00000599543 POTECB2RU33 542 aa24.48■■□□□ 1.51
PNKP-213ENST00000599543 OLFM4Q6UX06 510 aa24.48■■□□□ 1.51
PNKP-213ENST00000599543 LRP10Q7Z4F1 713 aa24.48■■□□□ 1.51
PNKP-213ENST00000599543 PRKRIP1Q9H875 184 aaPredicted RBP24.48■■□□□ 1.51
PNKP-213ENST00000599543 ZNF277Q9NRM2 450 aaPredicted RBP24.48■■□□□ 1.51
PNKP-213ENST00000599543 DDNO94850 711 aaPredicted RBP24.47■■□□□ 1.51
PNKP-213ENST00000599543 ANXA1P04083 346 aa24.47■■□□□ 1.51
PNKP-213ENST00000599543 PROSER3Q2NL68 480 aa24.47■■□□□ 1.51
PNKP-213ENST00000599543 PARP10Q53GL7 1025 aa24.47■■□□□ 1.51
PNKP-213ENST00000599543 PPP1R42Q7Z4L9 355 aa24.47■■□□□ 1.51
PNKP-213ENST00000599543 LAS1LQ9Y4W2 734 aaKnown RBP24.47■■□□□ 1.51
PNKP-213ENST00000599543 SCN4AP35499 1836 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms