RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	EMILIN1	Q9Y6C2	1016 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	ABCA9	Q8IUA7	1624 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	NLRP1	Q9C000	1473 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	ADGRB2	O60241	1585 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	ZSCAN12	O43309	604 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	ABCB7	O75027	752 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	HOXB7	P09629	217 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	IL13	P35225	146 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	TRDN	Q13061	729 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	CUL4A	Q13619	759 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	TSR1	Q2NL82	804 aa	Known RBP	4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	PPP4R3B	Q5MIZ7	849 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	C8orf58	Q8NAV2	365 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	SPC24	Q8NBT2	197 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	RBM42	Q9BTD8	480 aa	Known RBP	4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	SRRT	Q9BXP5	876 aa	Known RBP	4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	TM6SF1	Q9BZW5	370 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	MYOM1	P52179	1685 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	CHL1	O00533	1208 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	ERLIN1	O75477	346 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	EIF3J	O75822	258 aa	Known RBP	4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	TNNT1	P13805	278 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	GJB2	P29033	226 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	BMS1	Q14692	1282 aa	Known RBP	4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	KRT222	Q8N1A0	295 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	DDX11	Q96FC9	970 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	THUMPD2	Q9BTF0	503 aa	Known RBP	4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	CLIP2	Q9UDT6	1046 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	CTNNA3	Q9UI47	895 aa		4.15	□□□□□ -1.74
VMP1-216	ENST00000592790	VWDE	Q8N2E2	1590 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	PNPLA6	Q8IY17	1366 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	POTEB2	H3BUK9	544 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	ALDH1L1	O75891	902 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	CDKL5	O76039	1030 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	ZNF853	P0CG23	659 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	EIF2S2	P20042	333 aa	Known RBP	4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	DDIT3	P35638	169 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	SAFB	Q15424	915 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	HSP90B2P	Q58FF3	399 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	GAS2L3	Q86XJ1	694 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	TMEM87A	Q8NBN3	555 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	RNF25	Q96BH1	459 aa	Predicted RBP	4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	MEIS3	Q99687	375 aa		4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	UPF3B	Q9BZI7	483 aa	Known RBP	4.15	□□□□□ -1.75
VMP1-216	ENST00000592790	HCLS1	P14317	486 aa	Predicted RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	SET	Q01105	290 aa	Predicted RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	RRS1	Q15050	365 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	STK38	Q15208	465 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	CWC27	Q6UX04	472 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	NME9	Q86XW9	330 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	CCDC83	Q8IWF9	413 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	RHPN1	Q8TCX5	695 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	GBP3	Q9H0R5	595 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	FLT4	P35916	1363 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	GSPT1	P15170	499 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	SFPQ	P23246	707 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	ZNF165	P49910	485 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	MLEC	Q14165	292 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	POLA2	Q14181	598 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	AMOT	Q4VCS5	1084 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	JAKMIP3	Q5VZ66	844 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	CEP135	Q66GS9	1140 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	RALYL	Q86SE5	291 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	ZGPAT	Q8N5A5	531 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	DNAAF4	Q8WXU2	420 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	STAP2	Q9UGK3	403 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	LRRFIP2	Q9Y608	721 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	ABCC3	O15438	1527 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	ZC3H13	Q5T200	1668 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	HSPA4	P34932	840 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	NLRP6	P59044	892 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	TMCO3	Q6UWJ1	677 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	MCM10	Q7L590	875 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	RIC3	Q7Z5B4	369 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	TTC5	Q8N0Z6	440 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	ZNF397	Q8NF99	534 aa	Predicted RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	UBXN4	Q92575	508 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	SMARCE1	Q969G3	411 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	TMEM63C	Q9P1W3	806 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	CHMP3	Q9Y3E7	222 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	MYO1B	O43795	1136 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	SMC2	O95347	1197 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	IPO7	O95373	1038 aa	Known RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	MCM3	P25205	808 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	LEKR1	Q6ZMV7	388 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	AACS	Q86V21	672 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	TSPYL6	Q8N831	410 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	KCNH5	Q8NCM2	988 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	KCNV2	Q8TDN2	545 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	HYPK	Q9NX55	129 aa		4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	DBF4	Q9UBU7	674 aa	Predicted RBP	4.14	□□□□□ -1.75
VMP1-216	ENST00000592790	ME1	P48163	572 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	CBX1	P83916	185 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	TYRO3	Q06418	890 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	FILIP1L	Q4L180	1135 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	ZSCAN25	Q6NSZ9	544 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	PRPF40B	Q6NWY9	871 aa	Known RBP	4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	TXNDC2	Q86VQ3	553 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	CNPY2	Q9Y2B0	182 aa		4.13	□□□□□ -1.75
VMP1-216	ENST00000592790	ELP1	O95163	1332 aa		4.13	□□□□□ -1.75

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