RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	WWC3	Q9ULE0	1092 aa		11.96	□□□□□ -0.49
DNMT1-223	ENST00000591239	CARMIL3	Q8ND23	1372 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	RGL2	O15211	777 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	GRIN3B	O60391	1043 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	HOXB7	P09629	217 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	DPEP1	P16444	411 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	HLF	Q16534	295 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	TTLL7	Q6ZT98	887 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	AFDN	P55196	1824 aa	Known RBP	11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	BCOR	Q6W2J9	1755 aa		11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.95	□□□□□ -0.5
DNMT1-223	ENST00000591239	NRXN2	Q9P2S2	1712 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	MAP3K15	Q6ZN16	1313 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	ERVV-1	B6SEH8	477 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	ANXA1	P04083	346 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	KCNA3	P22001	575 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	YY1	P25490	414 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	PROSER3	Q2NL68	480 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	DUSP27	Q5VZP5	1158 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	KIF6	Q6ZMV9	814 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	LRP10	Q7Z4F1	713 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	SALL2	Q9Y467	1007 aa	Predicted RBP	11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	KIAA1551	Q9HCM1	1747 aa		11.94	□□□□□ -0.5
DNMT1-223	ENST00000591239	CHRNA5	P30532	468 aa		11.93	□□□□□ -0.5
DNMT1-223	ENST00000591239	HDGFL1	Q5TGJ6	251 aa		11.93	□□□□□ -0.5
DNMT1-223	ENST00000591239	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
DNMT1-223	ENST00000591239	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
DNMT1-223	ENST00000591239	IL16	Q14005	1332 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	NPHP1	O15259	732 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	PRR5L	Q6MZQ0	368 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	CCDC24	Q8N4L8	307 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	CNBD1	Q8NA66	436 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	ZBTB3	Q9H5J0	574 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	PIM2	Q9P1W9	311 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	CHPF2	Q9P2E5	772 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	BCS1L	Q9Y276	419 aa		11.92	□□□□□ -0.5
DNMT1-223	ENST00000591239	ELL2	O00472	640 aa	Predicted RBP	11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	AIMP1	Q12904	312 aa	Known RBP	11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	COPS6	Q7L5N1	327 aa		11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	WDR63	Q8IWG1	891 aa		11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	C8orf58	Q8NAV2	365 aa		11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	XAGE3	Q8WTP9	111 aa		11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	TSR2	Q969E8	191 aa	Known RBP	11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	BRIP1	Q9BX63	1249 aa		11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	DBF4	Q9UBU7	674 aa	Predicted RBP	11.91	□□□□□ -0.5
DNMT1-223	ENST00000591239	CHD4	Q14839	1912 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239		H0YIN7	160 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	CCER2	I3L3R5	266 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	PDE6B	P35913	854 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	ST5	P78524	1137 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	DALRD3	Q5D0E6	543 aa	Known RBP	11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	TPTE2	Q6XPS3	522 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	C2CD5	Q86YS7	1000 aa		11.9	□□□□□ -0.5
DNMT1-223	ENST00000591239	BRCA1	P38398	1863 aa	Known RBP	11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	ATP10D	Q9P241	1426 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	NUP98	P52948	1817 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	FAM177B	A6PVY3	158 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	GPT	P24298	496 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	TSPYL6	Q8N831	410 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	HYPK	Q9NX55	129 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	PDZRN3	Q9UPQ7	1066 aa		11.89	□□□□□ -0.51
DNMT1-223	ENST00000591239	GTF2E1	P29083	439 aa	Predicted RBP	11.88	□□□□□ -0.51
DNMT1-223	ENST00000591239	DIEXF	Q68CQ4	756 aa	Known RBP	11.88	□□□□□ -0.51
DNMT1-223	ENST00000591239	ZNF34	Q8IZ26	560 aa		11.88	□□□□□ -0.51
DNMT1-223	ENST00000591239	CHMP4A	Q9BY43	222 aa		11.88	□□□□□ -0.51
DNMT1-223	ENST00000591239	NYX	Q9GZU5	481 aa		11.88	□□□□□ -0.51
DNMT1-223	ENST00000591239	UBN2	Q6ZU65	1347 aa		11.87	□□□□□ -0.51
DNMT1-223	ENST00000591239	ANKRD31	Q8N7Z5	1873 aa		11.87	□□□□□ -0.51
DNMT1-223	ENST00000591239	CCDC30	Q5VVM6	783 aa		11.87	□□□□□ -0.51
DNMT1-223	ENST00000591239	ANKRD13D	Q6ZTN6	518 aa		11.87	□□□□□ -0.51
DNMT1-223	ENST00000591239	ARHGAP27	Q6ZUM4	889 aa		11.87	□□□□□ -0.51
DNMT1-223	ENST00000591239	TTLL6	Q8N841	843 aa		11.87	□□□□□ -0.51
DNMT1-223	ENST00000591239	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.87	□□□□□ -0.51	4e-16	■□□□□ 9
DNMT1-223	ENST00000591239	FANCI	Q9NVI1	1328 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	KLRG2	A4D1S0	409 aa	Predicted RBP	11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	SRGN	P10124	158 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	TWISTNB	Q3B726	338 aa	Predicted RBP	11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	PARP10	Q53GL7	1025 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	HSP90AB3P	Q58FF7	597 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	SUSD4	Q5VX71	490 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	PPP1R42	Q7Z4L9	355 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	NUTM1	Q86Y26	1132 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	PLBD2	Q8NHP8	589 aa		11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.86	□□□□□ -0.51
DNMT1-223	ENST00000591239	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	GOLGA2	Q08379	1002 aa		11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	TCIRG1	Q13488	830 aa		11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	ERFE	Q4G0M1	354 aa		11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	STYK1	Q6J9G0	422 aa		11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	PHAX	Q9H814	394 aa	Known RBP	11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	ARFGEF1	Q9Y6D6	1849 aa		11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	ZNF521	Q96K83	1311 aa		11.85	□□□□□ -0.51
DNMT1-223	ENST00000591239	DLEC1	Q9Y238	1755 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	NTSR2	O95665	410 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	NPR1	P16066	1061 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	NLRP10	Q86W26	655 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	MIER1	Q8N108	512 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms