RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 CLASRPQ8N2M8 674 aaKnown RBP17.09■□□□□ 0.33
CDK5RAP3-237ENST00000585163 KCNH5Q8NCM2 988 aa17.09■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ZSCAN22P10073 491 aaPredicted RBP17.09■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RGPD2P0DJD1 1756 aa17.09■□□□□ 0.33
CDK5RAP3-237ENST00000585163 ALDH1L1O75891 902 aa17.08■□□□□ 0.33
CDK5RAP3-237ENST00000585163 FGD1P98174 961 aa17.08■□□□□ 0.33
CDK5RAP3-237ENST00000585163 PLEKHO1Q53GL0 409 aaPredicted RBP17.08■□□□□ 0.33
CDK5RAP3-237ENST00000585163 RUFY2Q8WXA3 655 aa17.08■□□□□ 0.33
CDK5RAP3-237ENST00000585163 DIAPH3Q9NSV4 1193 aa17.08■□□□□ 0.33
CDK5RAP3-237ENST00000585163 STX6O43752 255 aa17.08■□□□□ 0.32
CDK5RAP3-237ENST00000585163 SYT1P21579 422 aa17.08■□□□□ 0.32
CDK5RAP3-237ENST00000585163 MPRIPQ6WCQ1 1025 aa17.08■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ECHDC1Q9NTX5 307 aa17.08■□□□□ 0.32
CDK5RAP3-237ENST00000585163 AMOTQ4VCS5 1084 aa17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 HYPKQ9NX55 129 aa17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 MAP3K2Q9Y2U5 619 aa17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CASTP20810 708 aaKnown RBP17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 GLIPR1L2Q4G1C9 344 aa17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 LRRC59Q96AG4 307 aaKnown RBP17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 C9orf78Q9NZ63 289 aaPredicted RBP17.07■□□□□ 0.32
CDK5RAP3-237ENST00000585163 NCAPD2Q15021 1401 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 KSR2Q6VAB6 950 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ERC1Q8IUD2 1116 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 FAM184AQ8NB25 1140 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 KCNB2Q92953 911 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 HDAC5Q9UQL6 1122 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CNPY2Q9Y2B0 182 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 HEG1Q9ULI3 1381 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 OVOS2A0A0G2JMS6 1433 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 RNMTO43148 476 aaKnown RBP17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 GIGYF1O75420 1035 aaPredicted RBP17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 GPATCH3Q96I76 525 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 LARP6Q9BRS8 491 aaKnown RBP17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 SMC3Q9UQE7 1217 aa17.06■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CHD2O14647 1828 aaKnown RBP17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 XPCQ01831 940 aaPredicted RBP17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PTH1RQ03431 593 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PSME1Q06323 249 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CCDC183Q5T5S1 534 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 VPS53Q5VIR6 699 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 TM6SF1Q9BZW5 370 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ATP6V1DQ9Y5K8 247 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 F13A1P00488 732 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CPA1P15085 419 aa17.05■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PXDNQ92626 1479 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 IFIT2P09913 472 aaKnown RBP17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 UBE2HP62256 183 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PROSER3Q2NL68 480 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 UVSSAQ2YD98 709 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 EVI5LQ96CN4 794 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ZSWIM6Q9HCJ5 1215 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ZBTB7CA1YPR0 619 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 LARGE1O95461 756 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ADCK5Q3MIX3 580 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 C1orf141Q5JVX7 400 aa17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PA2G4Q9UQ80 394 aaKnown RBP17.04■□□□□ 0.32
CDK5RAP3-237ENST00000585163 LETM1O95202 739 aaPredicted RBP17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CSPP1Q1MSJ5 1256 aa17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 JAKMIP1Q96N16 626 aaKnown RBP17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 NECTIN1Q15223 517 aa17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CWF19L2Q2TBE0 894 aaKnown RBP17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ESCO1Q5FWF5 840 aa17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PRPF40BQ6NWY9 871 aaKnown RBP17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ZSCAN31Q96LW9 406 aaPredicted RBP17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 SH2B1Q9NRF2 756 aaPredicted RBP17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 PDRG1Q9NUG6 133 aa17.03■□□□□ 0.32
CDK5RAP3-237ENST00000585163 ZMYND15Q9H091 742 aa17.02■□□□□ 0.32
CDK5RAP3-237ENST00000585163 CYP46A1Q9Y6A2 500 aa17.02■□□□□ 0.32
CDK5RAP3-237ENST00000585163 AACSQ86V21 672 aa17.02■□□□□ 0.31
CDK5RAP3-237ENST00000585163 LINS1Q8NG48 757 aa17.02■□□□□ 0.31
CDK5RAP3-237ENST00000585163 R3HCC1Q9Y3T6 440 aaKnown RBP17.02■□□□□ 0.31
CDK5RAP3-237ENST00000585163 UTYO14607 1347 aa17.02■□□□□ 0.31
CDK5RAP3-237ENST00000585163 GJB2P29033 226 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 ARHGEF25Q86VW2 580 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 CCDC83Q8IWF9 413 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 CCDC171Q6TFL3 1326 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 GRM8O00222 908 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 RBM33Q96EV2 1170 aaKnown RBP17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 KAZALD1Q96I82 304 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 MTMR6Q9Y217 621 aa17.01■□□□□ 0.31
CDK5RAP3-237ENST00000585163 PRAMEF22A3QJZ6 481 aa17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 GCP02774 474 aa17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 ZKSCAN1P17029 563 aaPredicted RBP17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 HIP1O00291 1037 aa17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 SASH1O94885 1247 aa17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 PTMAP06454 111 aaKnown RBP17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 SNRKQ9NRH2 765 aa17■□□□□ 0.31
CDK5RAP3-237ENST00000585163 FIBPO43427 364 aa16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 MAP4K1Q92918 833 aa16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 EAF2Q96CJ1 260 aaPredicted RBP16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 SUCLG2Q96I99 432 aa16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 SIPA1L3O60292 1781 aaPredicted RBP16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 ST3GAL1Q11201 340 aa16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 ME3Q16798 604 aa16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 RBM8AQ9Y5S9 174 aaKnown RBP16.99■□□□□ 0.31
CDK5RAP3-237ENST00000585163 SLIT3O75094 1523 aa16.98■□□□□ 0.31
CDK5RAP3-237ENST00000585163 DDX58O95786 925 aaKnown RBP16.98■□□□□ 0.31
CDK5RAP3-237ENST00000585163 CREB3L3Q68CJ9 461 aa16.98■□□□□ 0.31
CDK5RAP3-237ENST00000585163 BICC1Q9H694 974 aaKnown RBP16.98■□□□□ 0.31
CDK5RAP3-237ENST00000585163 DDX21Q9NR30 783 aaKnown RBP eCLIP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms