RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TEFQ10587 303 aa17.26■□□□□ 0.35
SS18-219ENST00000581570 EAPPQ56P03 285 aaPredicted RBP17.26■□□□□ 0.35
SS18-219ENST00000581570 ZNF790Q6PG37 636 aa17.26■□□□□ 0.35
SS18-219ENST00000581570 WBP1LQ9NX94 342 aa17.26■□□□□ 0.35
SS18-219ENST00000581570 FER1L6Q2WGJ9 1857 aa17.25■□□□□ 0.35
SS18-219ENST00000581570 ANKRD31Q8N7Z5 1873 aa17.25■□□□□ 0.35
SS18-219ENST00000581570 DIAPH1O60610 1272 aaKnown RBP17.25■□□□□ 0.35
SS18-219ENST00000581570 A1BGP04217 495 aa17.25■□□□□ 0.35
SS18-219ENST00000581570 LBX1P52954 281 aa17.25■□□□□ 0.35
SS18-219ENST00000581570 CLEC11AQ9Y240 323 aa17.25■□□□□ 0.35
SS18-219ENST00000581570 DICER1Q9UPY3 1922 aaKnown RBP17.24■□□□□ 0.35
SS18-219ENST00000581570 CCDC93Q567U6 631 aa17.24■□□□□ 0.35
SS18-219ENST00000581570 AMER1Q5JTC6 1135 aaPredicted RBP17.24■□□□□ 0.35
SS18-219ENST00000581570 C7orf43Q8WVR3 580 aa17.24■□□□□ 0.35
SS18-219ENST00000581570 IL17REQ8NFR9 667 aa17.23■□□□□ 0.35
SS18-219ENST00000581570 FMNL2Q96PY5 1086 aa17.23■□□□□ 0.35
SS18-219ENST00000581570 HACL1Q9UJ83 578 aa17.23■□□□□ 0.35
SS18-219ENST00000581570 COL11A2P13942 1736 aaPredicted RBP17.22■□□□□ 0.35
SS18-219ENST00000581570 GNAT3A8MTJ3 354 aa17.22■□□□□ 0.35
SS18-219ENST00000581570 FKBP4Q02790 459 aaKnown RBP eCLIP17.22■□□□□ 0.35
SS18-219ENST00000581570 DEFB115Q30KQ5 88 aa17.22■□□□□ 0.35
SS18-219ENST00000581570 DZIP3Q86Y13 1208 aaKnown RBP17.22■□□□□ 0.35
SS18-219ENST00000581570 ZNF541Q9H0D2 1346 aa17.21■□□□□ 0.35
SS18-219ENST00000581570 SLX4Q8IY92 1834 aa17.21■□□□□ 0.35
SS18-219ENST00000581570 UBR2Q8IWV8 1755 aa17.21■□□□□ 0.35
SS18-219ENST00000581570 EPHX2P34913 555 aa17.21■□□□□ 0.35
SS18-219ENST00000581570 NBPF5PQ86XG9 351 aaPredicted RBP17.21■□□□□ 0.35
SS18-219ENST00000581570 ZNF277Q9NRM2 450 aaPredicted RBP17.21■□□□□ 0.35
SS18-219ENST00000581570 RASSF10A6NK89 507 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 SLC34A2O95436 690 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 HSPA8P11142 646 aaKnown RBP17.2■□□□□ 0.34
SS18-219ENST00000581570 NPR1P16066 1061 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 PNMA8AQ86V59 439 aaPredicted RBP17.2■□□□□ 0.34
SS18-219ENST00000581570 CNTROBQ8N137 903 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 GAS2L2Q8NHY3 880 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 ABHD8Q96I13 439 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 RNF216Q9NWF9 866 aaPredicted RBP17.2■□□□□ 0.34
SS18-219ENST00000581570 SCN7AQ01118 1682 aa17.2■□□□□ 0.34
SS18-219ENST00000581570 MAP2K1Q02750 393 aaPredicted RBP17.19■□□□□ 0.34
SS18-219ENST00000581570 TRIM26Q12899 539 aaPredicted RBP17.19■□□□□ 0.34
SS18-219ENST00000581570 MAP1SQ66K74 1059 aaPredicted RBP17.19■□□□□ 0.34
SS18-219ENST00000581570 CLEC4GQ6UXB4 293 aa17.19■□□□□ 0.34
SS18-219ENST00000581570 RTKN2Q8IZC4 609 aa17.19■□□□□ 0.34
SS18-219ENST00000581570 WDR33Q9C0J8 1336 aaKnown RBP17.19■□□□□ 0.34
SS18-219ENST00000581570 KCNQ3O43525 872 aa17.18■□□□□ 0.34
SS18-219ENST00000581570 SCN4AP35499 1836 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 KLRG2A4D1S0 409 aaPredicted RBP17.17■□□□□ 0.34
SS18-219ENST00000581570 BTBD11A6QL63 1104 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 U2SURPO15042 1029 aaKnown RBP17.17■□□□□ 0.34
SS18-219ENST00000581570 PIP4K2AP48426 406 aaPredicted RBP17.17■□□□□ 0.34
SS18-219ENST00000581570 FAM161AQ3B820 660 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 OLFM4Q6UX06 510 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 TPTE2Q6XPS3 522 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 ABT1Q9ULW3 272 aaKnown RBP17.17■□□□□ 0.34
SS18-219ENST00000581570 ZNF652Q9Y2D9 606 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 USP16Q9Y5T5 823 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 RNF123Q5XPI4 1314 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 CLSPNQ9HAW4 1339 aa17.17■□□□□ 0.34
SS18-219ENST00000581570 FZD9O00144 591 aa17.16■□□□□ 0.34
SS18-219ENST00000581570 NPM3O75607 178 aaKnown RBP17.16■□□□□ 0.34
SS18-219ENST00000581570 IARSP41252 1262 aaKnown RBP17.16■□□□□ 0.34
SS18-219ENST00000581570 SYNE4Q8N205 404 aa17.16■□□□□ 0.34
SS18-219ENST00000581570 VIRMAQ69YN4 1812 aaKnown RBP17.15■□□□□ 0.34
SS18-219ENST00000581570 CC2D1BQ5T0F9 858 aaKnown RBP17.15■□□□□ 0.34
SS18-219ENST00000581570 FAM177BA6PVY3 158 aa17.14■□□□□ 0.33
SS18-219ENST00000581570 ALDH1B1P30837 517 aa17.14■□□□□ 0.33
SS18-219ENST00000581570 HOXD11P31277 338 aaPredicted RBP17.14■□□□□ 0.33
SS18-219ENST00000581570 GPC2Q8N158 579 aa17.14■□□□□ 0.33
SS18-219ENST00000581570 NIP7Q9Y221 180 aaKnown RBP eCLIP17.14■□□□□ 0.33
SS18-219ENST00000581570 PRAMEF22A3QJZ6 481 aa17.13■□□□□ 0.33
SS18-219ENST00000581570 JDP2Q8WYK2 163 aa17.13■□□□□ 0.33
SS18-219ENST00000581570 DDX21Q9NR30 783 aaKnown RBP eCLIP17.13■□□□□ 0.33
SS18-219ENST00000581570 CEMIPQ8WUJ3 1361 aa17.13■□□□□ 0.33
SS18-219ENST00000581570 SNRPA1P09661 255 aaKnown RBP17.12■□□□□ 0.33
SS18-219ENST00000581570 PCGF6Q9BYE7 350 aa17.12■□□□□ 0.33
SS18-219ENST00000581570 ARFGEF2Q9Y6D5 1785 aa17.12■□□□□ 0.33
SS18-219ENST00000581570 CACNA1SQ13698 1873 aa17.12■□□□□ 0.33
SS18-219ENST00000581570 CCDC85CA6NKD9 419 aa17.11■□□□□ 0.33
SS18-219ENST00000581570 PER1O15534 1290 aaPredicted RBP17.11■□□□□ 0.33
SS18-219ENST00000581570 GTF2E1P29083 439 aaPredicted RBP17.11■□□□□ 0.33
SS18-219ENST00000581570 ECE1P42892 770 aa17.11■□□□□ 0.33
SS18-219ENST00000581570 EIF6P56537 245 aaKnown RBP17.11■□□□□ 0.33
SS18-219ENST00000581570 PAXIP1Q6ZW49 1069 aaPredicted RBP17.11■□□□□ 0.33
SS18-219ENST00000581570 CAPNS2Q96L46 248 aa17.11■□□□□ 0.33
SS18-219ENST00000581570 PSMD1Q99460 953 aa17.11■□□□□ 0.33
SS18-219ENST00000581570 BEGAINQ9BUH8 593 aa17.11■□□□□ 0.33
SS18-219ENST00000581570 GJA3Q9Y6H8 435 aa17.11■□□□□ 0.33
SS18-219ENST00000581570 ADAMTSL1Q8N6G6 1762 aa17.1■□□□□ 0.33
SS18-219ENST00000581570 RGL2O15211 777 aa17.1■□□□□ 0.33
SS18-219ENST00000581570 LMOD1P29536 600 aaPredicted RBP17.1■□□□□ 0.33
SS18-219ENST00000581570 MLLT1Q03111 559 aaPredicted RBP17.1■□□□□ 0.33
SS18-219ENST00000581570 PHACTR3Q96KR7 559 aa17.1■□□□□ 0.33
SS18-219ENST00000581570 FMR1Q06787 632 aaKnown RBP eCLIP17.09■□□□□ 0.33
SS18-219ENST00000581570 GRM1Q13255 1194 aa17.09■□□□□ 0.33
SS18-219ENST00000581570 GPR101Q96P66 508 aaPredicted RBP17.09■□□□□ 0.33
SS18-219ENST00000581570 KIF7Q2M1P5 1343 aa17.09■□□□□ 0.33
SS18-219ENST00000581570 BCORQ6W2J9 1755 aa17.08■□□□□ 0.33
SS18-219ENST00000581570 NBPF26B4DH59 902 aa17.08■□□□□ 0.32
SS18-219ENST00000581570 CNGB1Q14028 1251 aaPredicted RBP17.08■□□□□ 0.32
SS18-219ENST00000581570 HLFQ16534 295 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms