RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TGFB2P61812 414 aa26.19■■□□□ 1.78
SS18-218ENST00000581021 DUSP27Q5VZP5 1158 aa26.19■■□□□ 1.78
SS18-218ENST00000581021 TSR2Q969E8 191 aaKnown RBP26.19■■□□□ 1.78
SS18-218ENST00000581021 DCAF8L1A6NGE4 600 aa26.18■■□□□ 1.78
SS18-218ENST00000581021 BRCA1P38398 1863 aaKnown RBP26.18■■□□□ 1.78
SS18-218ENST00000581021 CLEC4GQ6UXB4 293 aa26.18■■□□□ 1.78
SS18-218ENST00000581021 C8orf58Q8NAV2 365 aa26.18■■□□□ 1.78
SS18-218ENST00000581021 MAP3K15Q6ZN16 1313 aa26.17■■□□□ 1.78
SS18-218ENST00000581021 HOXB7P09629 217 aa26.17■■□□□ 1.78
SS18-218ENST00000581021 CHRNA5P30532 468 aa26.17■■□□□ 1.78
SS18-218ENST00000581021 CCDC24Q8N4L8 307 aa26.17■■□□□ 1.78
SS18-218ENST00000581021 CHPF2Q9P2E5 772 aa26.17■■□□□ 1.78
SS18-218ENST00000581021 ANKRD31Q8N7Z5 1873 aa26.17■■□□□ 1.78
SS18-218ENST00000581021 RGL2O15211 777 aa26.16■■□□□ 1.78
SS18-218ENST00000581021 HDGFL1Q5TGJ6 251 aa26.16■■□□□ 1.78
SS18-218ENST00000581021 PRR5LQ6MZQ0 368 aa26.16■■□□□ 1.78
SS18-218ENST00000581021 SETDB2Q96T68 719 aa26.15■■□□□ 1.78
SS18-218ENST00000581021 ZBTB3Q9H5J0 574 aa26.15■■□□□ 1.78
SS18-218ENST00000581021 ZNF652Q9Y2D9 606 aa26.15■■□□□ 1.78
SS18-218ENST00000581021 ERVV-1B6SEH8 477 aa26.14■■□□□ 1.78
SS18-218ENST00000581021 ELL2O00472 640 aaPredicted RBP26.14■■□□□ 1.78
SS18-218ENST00000581021 TSPYL6Q8N831 410 aa26.14■■□□□ 1.78
SS18-218ENST00000581021 DDX21Q9NR30 783 aaKnown RBP eCLIP26.14■■□□□ 1.78
SS18-218ENST00000581021 NUP98P52948 1817 aa26.14■■□□□ 1.77
SS18-218ENST00000581021 ATP10DQ9P241 1426 aa26.14■■□□□ 1.77
SS18-218ENST00000581021 IL16Q14005 1332 aa26.14■■□□□ 1.77
SS18-218ENST00000581021 CCER2I3L3R5 266 aa26.13■■□□□ 1.77
SS18-218ENST00000581021 KIF6Q6ZMV9 814 aa26.13■■□□□ 1.77
SS18-218ENST00000581021 SPINK5Q9NQ38 1064 aaPredicted RBP26.13■■□□□ 1.77
SS18-218ENST00000581021 NIP7Q9Y221 180 aaKnown RBP eCLIP26.13■■□□□ 1.77
SS18-218ENST00000581021 XAGE3Q8WTP9 111 aa26.12■■□□□ 1.77
SS18-218ENST00000581021 COL11A2P13942 1736 aaPredicted RBP26.11■■□□□ 1.77
SS18-218ENST00000581021 DIEXFQ68CQ4 756 aaKnown RBP26.11■■□□□ 1.77
SS18-218ENST00000581021 COPS6Q7L5N1 327 aa26.11■■□□□ 1.77
SS18-218ENST00000581021 UBN2Q6ZU65 1347 aa26.11■■□□□ 1.77
SS18-218ENST00000581021 FANCIQ9NVI1 1328 aa26.11■■□□□ 1.77
SS18-218ENST00000581021 CNBD1Q8NA66 436 aa26.1■■□□□ 1.77
SS18-218ENST00000581021 ZNF521Q96K83 1311 aa26.1■■□□□ 1.77
SS18-218ENST00000581021 DLEC1Q9Y238 1755 aa26.1■■□□□ 1.77
SS18-218ENST00000581021 WDR63Q8IWG1 891 aa26.09■■□□□ 1.77
SS18-218ENST00000581021 GPTP24298 496 aa26.08■■□□□ 1.77
SS18-218ENST00000581021 AIMP1Q12904 312 aaKnown RBP26.08■■□□□ 1.77
SS18-218ENST00000581021 NBPF5PQ86XG9 351 aaPredicted RBP26.08■■□□□ 1.77
SS18-218ENST00000581021 FAM177BA6PVY3 158 aa26.07■■□□□ 1.76
SS18-218ENST00000581021 GRIN3BO60391 1043 aa26.07■■□□□ 1.76
SS18-218ENST00000581021 GIGYF2Q6Y7W6 1299 aaKnown RBP26.07■■□□□ 1.76
SS18-218ENST00000581021 MIER1Q8N108 512 aa26.07■■□□□ 1.76
SS18-218ENST00000581021 DBF4Q9UBU7 674 aaPredicted RBP26.07■■□□□ 1.76
SS18-218ENST00000581021 BCS1LQ9Y276 419 aa26.07■■□□□ 1.76
SS18-218ENST00000581021 YY1P25490 414 aa26.06■■□□□ 1.76
SS18-218ENST00000581021 ZNF34Q8IZ26 560 aa26.06■■□□□ 1.76
SS18-218ENST00000581021 BRIP1Q9BX63 1249 aa26.06■■□□□ 1.76
SS18-218ENST00000581021 ABCC12Q96J65 1359 aa26.06■■□□□ 1.76
SS18-218ENST00000581021 C2CD5Q86YS7 1000 aa26.05■■□□□ 1.76
SS18-218ENST00000581021 PIM2Q9P1W9 311 aa26.05■■□□□ 1.76
SS18-218ENST00000581021 CHD4Q14839 1912 aa26.05■■□□□ 1.76
SS18-218ENST00000581021 TNRC6CQ9HCJ0 1690 aaKnown RBP26.05■■□□□ 1.76
SS18-218ENST00000581021 ARFGEF1Q9Y6D6 1849 aa26.03■■□□□ 1.76
SS18-218ENST00000581021 SUSD4Q5VX71 490 aa26.03■■□□□ 1.76
SS18-218ENST00000581021 ANKRD36CQ5JPF3 1778 aa26.02■■□□□ 1.76
SS18-218ENST00000581021 ST5P78524 1137 aa26.02■■□□□ 1.76
SS18-218ENST00000581021 DALRD3Q5D0E6 543 aaKnown RBP26.02■■□□□ 1.76
SS18-218ENST00000581021 NUTM1Q86Y26 1132 aa26.02■■□□□ 1.76
SS18-218ENST00000581021 PHAXQ9H814 394 aaKnown RBP26.02■■□□□ 1.76
SS18-218ENST00000581021 HYPKQ9NX55 129 aa26.02■■□□□ 1.76
SS18-218ENST00000581021 TCERG1O14776 1098 aaKnown RBP26.01■■□□□ 1.75
SS18-218ENST00000581021 TWISTNBQ3B726 338 aaPredicted RBP26.01■■□□□ 1.75
SS18-218ENST00000581021 IBTKQ9P2D0 1353 aaPredicted RBP26.01■■□□□ 1.75
SS18-218ENST00000581021 H0YIN7 160 aa26■■□□□ 1.75
SS18-218ENST00000581021 NPHP1O15259 732 aa26■■□□□ 1.75
SS18-218ENST00000581021 NTSR2O95665 410 aa26■■□□□ 1.75
SS18-218ENST00000581021 PDE6BP35913 854 aa26■■□□□ 1.75
SS18-218ENST00000581021 TPTE2Q6XPS3 522 aa26■■□□□ 1.75
SS18-218ENST00000581021 EXOSC9Q06265 439 aaKnown RBP25.99■■□□□ 1.75
SS18-218ENST00000581021 ERFEQ4G0M1 354 aa25.99■■□□□ 1.75
SS18-218ENST00000581021 PLBD2Q8NHP8 589 aa25.99■■□□□ 1.75
SS18-218ENST00000581021 ARFGEF2Q9Y6D5 1785 aa25.99■■□□□ 1.75
SS18-218ENST00000581021 KLRG2A4D1S0 409 aaPredicted RBP25.98■■□□□ 1.75
SS18-218ENST00000581021 CCDC30Q5VVM6 783 aa25.98■■□□□ 1.75
SS18-218ENST00000581021 SRGNP10124 158 aa25.97■■□□□ 1.75
SS18-218ENST00000581021 TCIRG1Q13488 830 aa25.97■■□□□ 1.75
SS18-218ENST00000581021 ANKRD13DQ6ZTN6 518 aa25.97■■□□□ 1.75
SS18-218ENST00000581021 ZNF428Q96B54 188 aa25.97■■□□□ 1.75
SS18-218ENST00000581021 NLRP10Q86W26 655 aa25.96■■□□□ 1.75
SS18-218ENST00000581021 VAMP4O75379 141 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 GOLGA2Q08379 1002 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 PARP10Q53GL7 1025 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 C3orf67Q6ZVT6 689 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 TTLL6Q8N841 843 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 NYXQ9GZU5 481 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 RIC1Q4ADV7 1423 aa25.95■■□□□ 1.74
SS18-218ENST00000581021 G2E3Q7L622 706 aa25.94■■□□□ 1.74
SS18-218ENST00000581021 ZNF622Q969S3 477 aaKnown RBP eCLIP25.94■■□□□ 1.74
SS18-218ENST00000581021 HSP90AB3PQ58FF7 597 aa25.93■■□□□ 1.74
SS18-218ENST00000581021 ARHGAP27Q6ZUM4 889 aa25.93■■□□□ 1.74
SS18-218ENST00000581021 SYNE4Q8N205 404 aa25.93■■□□□ 1.74
SS18-218ENST00000581021 ISCA1Q9BUE6 129 aa25.93■■□□□ 1.74
SS18-218ENST00000581021 MYH16Q9H6N6 1097 aa25.93■■□□□ 1.74
SS18-218ENST00000581021 PDZRN3Q9UPQ7 1066 aa25.93■■□□□ 1.74
SS18-218ENST00000581021 ADCY9O60503 1353 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms