RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 PPIP5K2O43314 1243 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 UQCRFS1P1P0C7P4 283 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 PDE3AQ14432 1141 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 HSP90AB2PQ58FF8 381 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 CKAP2LQ8IYA6 745 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 BICD2Q8TD16 824 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 CRNKL1Q9BZJ0 848 aaKnown RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 NBPF3Q9H094 633 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 ABCA8O94911 1581 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 RPRD2Q5VT52 1461 aaKnown RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 KIAA1107Q9UPP5 1409 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 VPS37CA5D8V6 355 aaPredicted RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 RANBP6O60518 1105 aaKnown RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 HSPA6P17066 643 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 PIP4K2AP48426 406 aaPredicted RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 NAP1L1P55209 391 aaKnown RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC173Q0VFZ6 552 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 AAMPQ13685 434 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 TTF1Q15361 905 aaPredicted RBP3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 USP48Q86UV5 1035 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 MAST3O60307 1309 aa3.46□□□□□ -1.86
SMCHD1-203ENST00000577880 FOSBP53539 338 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 EXOSC9Q06265 439 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 DUSP27Q5VZP5 1158 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 MSL1Q68DK7 614 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC117Q8IWD4 279 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 JMYQ8N9B5 988 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC150Q8NCX0 1101 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 WASF1Q92558 559 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 DCAF5Q96JK2 942 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 RAB34Q9BZG1 259 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 LRRCC1Q9C099 1032 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 ABCC2Q92887 1545 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 KIF4AO95239 1232 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 BAG4O95429 457 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 IRX3P78415 501 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 STIM1Q13586 685 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 PRKG1Q13976 671 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 IMMTQ16891 758 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 PARP10Q53GL7 1025 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC178Q5BJE1 867 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 GPBP1L1Q9HC44 474 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 MAGEC2Q9UBF1 373 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 SAMM50Q9Y512 469 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 ERICH3Q5RHP9 1530 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 ATP10AO60312 1499 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 PLCH2O75038 1416 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC196A0A1B0GTZ2 297 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 PRIM1P49642 420 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 ANKRD13DQ6ZTN6 518 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 C2CD5Q86YS7 1000 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 SEPT12Q8IYM1 358 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 CCDC12Q8WUD4 166 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 TMEM106CQ9BVX2 250 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 ZMYM4Q5VZL5 1548 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 NEO1Q92859 1461 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 SSFA2P28290 1259 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 DLGAP5Q15398 846 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 FOXD4L5Q5VV16 416 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 OLFM4Q6UX06 510 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 FOXD4L4Q8WXT5 416 aaPredicted RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 DNAAF4Q8WXU2 420 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 DDX11Q96FC9 970 aa3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 C14orf93Q9H972 538 aaKnown RBP3.45□□□□□ -1.86
SMCHD1-203ENST00000577880 TSPY2A6NKD2 308 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 PICALMQ13492 652 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 SPOUT1Q5T280 376 aaKnown RBP3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 DCAF15Q66K64 600 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 MCM10Q7L590 875 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 APBB1IPQ7Z5R6 666 aaPredicted RBP3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 NUTM1Q86Y26 1132 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 PIBF1Q8WXW3 757 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 ORAI2Q96SN7 254 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 GGA1Q9UJY5 639 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 PDZRN3Q9UPQ7 1066 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 ATP5J2-PTCD1G3V325 749 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 PPP2R1AP30153 589 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 AKAP4Q5JQC9 854 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 ARMC9Q7Z3E5 817 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 VWDEQ8N2E2 1590 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 MPNDQ8N594 471 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 GOLGA6L1Q8N7Z2 621 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 MROH2AA6NES4 1674 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 SHPRHQ149N8 1683 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 AFF2P51816 1311 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 UFL1O94874 794 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 CT47B1P0C2W7 299 aaPredicted RBP3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 LIG1P18858 919 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 PDCP20941 246 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 CNGA1P29973 690 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 DALRD3Q5D0E6 543 aaKnown RBP3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 POTEAQ6S8J7 498 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 TTC6Q86TZ1 520 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 TTC16Q8NEE8 873 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 LNPKQ9C0E8 428 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 FOXD4L1Q9NU39 408 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 MIS18AQ9NYP9 233 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 EMILIN1Q9Y6C2 1016 aa3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 MSNP26038 577 aaKnown RBP3.44□□□□□ -1.86
SMCHD1-203ENST00000577880 KIF5BP33176 963 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms