RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 SRSF11Q05519 484 aaKnown RBP6.05□□□□□ -1.44
VPS39-212ENST00000570023 ZCCHC2Q9C0B9 1178 aaKnown RBP6.05□□□□□ -1.44
VPS39-212ENST00000570023 MBIPQ9NS73 344 aa6.05□□□□□ -1.44
VPS39-212ENST00000570023 ATXN7L1Q9ULK2 861 aaPredicted RBP6.05□□□□□ -1.44
VPS39-212ENST00000570023 PHF24Q9UPV7 400 aa6.05□□□□□ -1.44
VPS39-212ENST00000570023 PCDHGC4Q9Y5F7 938 aa6.05□□□□□ -1.44
VPS39-212ENST00000570023 DCAF1Q9Y4B6 1507 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 FOXO3O43524 673 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 BNIP3LO60238 219 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 OCLNQ16625 522 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 TMEM164Q5U3C3 297 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 BICDL1Q6ZP65 573 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 ZSCAN1Q8NBB4 408 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 PHACTR1Q9C0D0 580 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 HCN4Q9Y3Q4 1203 aa6.04□□□□□ -1.44
VPS39-212ENST00000570023 SUPT5HO00267 1087 aaKnown RBP6.03□□□□□ -1.44
VPS39-212ENST00000570023 ATXN7O15265 892 aaPredicted RBP6.03□□□□□ -1.44
VPS39-212ENST00000570023 LGR5O75473 907 aa6.03□□□□□ -1.44
VPS39-212ENST00000570023 TNP2Q05952 138 aa6.03□□□□□ -1.44
VPS39-212ENST00000570023 PDE4CQ08493 712 aa6.03□□□□□ -1.44
VPS39-212ENST00000570023 GLIPR1L2Q4G1C9 344 aa6.03□□□□□ -1.44
VPS39-212ENST00000570023 ALDH16A1Q8IZ83 802 aa6.03□□□□□ -1.44
VPS39-212ENST00000570023 CHMP7Q8WUX9 453 aaPredicted RBP6.03□□□□□ -1.44
VPS39-212ENST00000570023 CLP1Q92989 425 aaKnown RBP6.03□□□□□ -1.44
VPS39-212ENST00000570023 ADAMTS2O95450 1211 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 FAM157BP0CG42 384 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 MX2P20592 715 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 RHPN1Q8TCX5 695 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 KLRG1Q96E93 195 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 ABHD17AQ96GS6 310 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 ANKIB1Q9P2G1 1089 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 HCN2Q9UL51 889 aa6.02□□□□□ -1.45
VPS39-212ENST00000570023 NSFL1CQ9UNZ2 370 aaKnown RBP6.02□□□□□ -1.45
VPS39-212ENST00000570023 EFSO43281 561 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 TRIM26Q12899 539 aaPredicted RBP6.01□□□□□ -1.45
VPS39-212ENST00000570023 LAMC2Q13753 1193 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 RTN1Q16799 776 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 FAM182BQ5T319 152 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 LRRC69Q6ZNQ3 347 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 NEUROD4Q9HD90 331 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 STK17AQ9UEE5 414 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 GJA3Q9Y6H8 435 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 IGF1RP08069 1367 aa6.01□□□□□ -1.45
VPS39-212ENST00000570023 MAPTP10636 758 aaKnown RBP6□□□□□ -1.45
VPS39-212ENST00000570023 FGFR3P22607 806 aa6□□□□□ -1.45
VPS39-212ENST00000570023 MAP2K3P46734 347 aa6□□□□□ -1.45
VPS39-212ENST00000570023 FKBP5Q13451 457 aaPredicted RBP6□□□□□ -1.45
VPS39-212ENST00000570023 HIF1AQ16665 826 aa6□□□□□ -1.45
VPS39-212ENST00000570023 COL26A1Q96A83 441 aa6□□□□□ -1.45
VPS39-212ENST00000570023 MYO19Q96H55 970 aa6□□□□□ -1.45
VPS39-212ENST00000570023 SUSD3Q96L08 255 aa6□□□□□ -1.45
VPS39-212ENST00000570023 PRIMPOLQ96LW4 560 aa6□□□□□ -1.45
VPS39-212ENST00000570023 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6□□□□□ -1.45
VPS39-212ENST00000570023 LRRC4BQ9NT99 713 aa6□□□□□ -1.45
VPS39-212ENST00000570023 CXXC1Q9P0U4 656 aaPredicted RBP6□□□□□ -1.45
VPS39-212ENST00000570023 SLAIN2Q9P270 581 aa6□□□□□ -1.45
VPS39-212ENST00000570023 CCDC180Q9P1Z9 1646 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 TMEM88BA6NKF7 163 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 C2CD2LO14523 706 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 PRMT3O60678 531 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 CTBSQ01459 385 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 TAF7LQ5H9L4 462 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 IER5Q5VY09 327 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 ZNF385CQ66K41 422 aaPredicted RBP5.99□□□□□ -1.45
VPS39-212ENST00000570023 ZNF280CQ8ND82 737 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 WHAMMQ8TF30 809 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 NGLY1Q96IV0 654 aa5.99□□□□□ -1.45
VPS39-212ENST00000570023 QTRT2Q9H974 415 aaKnown RBP5.99□□□□□ -1.45
VPS39-212ENST00000570023 KHNYNO15037 678 aaKnown RBP5.98□□□□□ -1.45
VPS39-212ENST00000570023 KCNQ4P56696 695 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 LYPD4Q6UWN0 246 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 VTI1AQ96AJ9 217 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 ACDQ96AP0 544 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 HSH2DQ96JZ2 352 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 STRN4Q9NRL3 753 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 DMGDHQ9UI17 866 aaKnown RBP5.98□□□□□ -1.45
VPS39-212ENST00000570023 BCS1LQ9Y276 419 aa5.98□□□□□ -1.45
VPS39-212ENST00000570023 DCDC2BA2VCK2 349 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 FAM181BA6NEQ2 426 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 TGFBR3LH3BV60 316 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 ARHGEF15O94989 841 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 CELA2BP08218 269 aaPredicted RBP5.97□□□□□ -1.45
VPS39-212ENST00000570023 BMP4P12644 408 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 CD33P20138 364 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 FGD1P98174 961 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 OXCT2Q9BYC2 517 aaPredicted RBP5.97□□□□□ -1.45
VPS39-212ENST00000570023 AVENQ9NQS1 362 aaPredicted RBP5.97□□□□□ -1.45
VPS39-212ENST00000570023 MARK1Q9P0L2 795 aa5.97□□□□□ -1.45
VPS39-212ENST00000570023 PTCD1O75127 700 aaKnown RBP5.96□□□□□ -1.46
VPS39-212ENST00000570023 ARAFP10398 606 aa5.96□□□□□ -1.46
VPS39-212ENST00000570023 BCRP11274 1271 aa5.96□□□□□ -1.46
VPS39-212ENST00000570023 TYRO3Q06418 890 aa5.96□□□□□ -1.46
VPS39-212ENST00000570023 C11orf91Q3C1V1 193 aa5.96□□□□□ -1.46
VPS39-212ENST00000570023 BTLAQ7Z6A9 289 aa5.96□□□□□ -1.46
VPS39-212ENST00000570023 LRFN2Q9ULH4 789 aa5.96□□□□□ -1.46
VPS39-212ENST00000570023 OIP5O43482 229 aa5.95□□□□□ -1.46
VPS39-212ENST00000570023 ATP2B4P23634 1241 aa5.95□□□□□ -1.46
VPS39-212ENST00000570023 SFSWAPQ12872 951 aaKnown RBP5.95□□□□□ -1.46
VPS39-212ENST00000570023 COX20Q5RI15 118 aa5.95□□□□□ -1.46
VPS39-212ENST00000570023 GOLGA6L1Q8N7Z2 621 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms