RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	TAF3	Q5VWG9	929 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	ERC1	Q8IUD2	1116 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	UNC5CL	Q8IV45	518 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	WASHC4	Q2M389	1173 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	NCBP3	Q53F19	620 aa	Known RBP	13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	TMCO3	Q6UWJ1	677 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	SYTL4	Q96C24	671 aa	Predicted RBP	13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	RBM8A	Q9Y5S9	174 aa	Known RBP	13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	SNX14	Q9Y5W7	946 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	ABTB2	Q8N961	1025 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	KIF20A	O95235	890 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	RBM33	Q96EV2	1170 aa	Known RBP	13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	ZFP91	Q96JP5	570 aa	Predicted RBP	13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	SLC26A8	Q96RN1	970 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	PUS7	Q96PZ0	661 aa	Known RBP	13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	OGFR	Q9NZT2	677 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	CLASP1	Q7Z460	1538 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	UHRF1BP1L	A0JNW5	1464 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	SMTNL1	A8MU46	457 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	TMC6	Q7Z403	805 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	FSIP1	Q8NA03	581 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	ANO10	Q9NW15	660 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	PA2G4	Q9UQ80	394 aa	Known RBP	13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	NLRP1	Q9C000	1473 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	DMTN	Q08495	405 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	SNW1	Q13573	536 aa	Known RBP	13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	CFAP100	Q494V2	611 aa		13.39	□□□□□ -0.27
CLN3-238	ENST00000569430	RTL1	A6NKG5	1358 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	CEP152	O94986	1710 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	CCAR1	Q8IX12	1150 aa	Known RBP	13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	DNAAF4	Q8WXU2	420 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	FEZ1	Q99689	392 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	EID1	Q9Y6B2	187 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	MYL6B	P14649	208 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	MTHFSD	Q2M296	383 aa	Known RBP	13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	OLFM4	Q6UX06	510 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	CBX8	Q9HC52	389 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	VGLL3	A8MV65	326 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	CPLX2	Q6PUV4	134 aa	Known RBP	13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	NOL10	Q9BSC4	688 aa	Known RBP	13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	USP16	Q9Y5T5	823 aa		13.38	□□□□□ -0.27
CLN3-238	ENST00000569430	PPRC1	Q5VV67	1664 aa	Known RBP	13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	LIG1	P18858	919 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	CEBPA	P49715	358 aa	Predicted RBP	13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	BRPF1	P55201	1214 aa	Predicted RBP	13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	RALYL	Q86SE5	291 aa	Known RBP	13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	NRBP1	Q9UHY1	535 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	MAP3K4	Q9Y6R4	1608 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	IQGAP1	P46940	1657 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	CCDC69	A6NI79	296 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	CLEC17A	Q6ZS10	378 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	CHL1	O00533	1208 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	TRIM29	Q14134	588 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	ATP2B3	Q16720	1220 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	HSP90B2P	Q58FF3	399 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	GTF3C6	Q969F1	213 aa		13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	PHAX	Q9H814	394 aa	Known RBP	13.37	□□□□□ -0.27
CLN3-238	ENST00000569430	TET3	O43151	1660 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	RASEF	Q8IZ41	740 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	BRF1	Q92994	677 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	TIGD1	Q96MW7	591 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	ZSWIM4	Q9H7M6	989 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	CALCOCO1	Q9P1Z2	691 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	MROH2A	A6NES4	1674 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	RIMS2	Q9UQ26	1411 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	SGSM2	O43147	1006 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	HSPA4	P34932	840 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	NPHP3	Q7Z494	1330 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	RNF17	Q9BXT8	1623 aa	Known RBP	13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	TULP1	O00294	542 aa	Predicted RBP	13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	AOPEP	Q8N6M6	819 aa		13.36	□□□□□ -0.27
CLN3-238	ENST00000569430	SBNO2	Q9Y2G9	1366 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	CYP2E1	P05181	493 aa	Predicted RBP	13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	TRDN	Q13061	729 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	STX1A	Q16623	288 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	HSP90AA4P	Q58FG1	418 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	LARP1	Q6PKG0	1096 aa	Known RBP	13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	NFXL1	Q6ZNB6	911 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	ERCC4	Q92889	916 aa	Predicted RBP	13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	EVI5L	Q96CN4	794 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	CCDC34	Q96HJ3	373 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	EFCAB6	Q5THR3	1501 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	BMS1	Q14692	1282 aa	Known RBP	13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	CDC37L1	Q7L3B6	337 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	RAB11FIP4	Q86YS3	637 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	KIAA1524	Q8TCG1	905 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	DNAI1	Q9UI46	699 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	POLR3D	P05423	398 aa	Predicted RBP	13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	CUL4A	Q13619	759 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	ELF2	Q15723	593 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	RASSF8	Q8NHQ8	419 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	CHMP4C	Q96CF2	233 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	SOS1	Q07889	1333 aa	Predicted RBP	13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	POGZ	Q7Z3K3	1410 aa		13.35	□□□□□ -0.27
CLN3-238	ENST00000569430	BTBD11	A6QL63	1104 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	SLU7	O95391	586 aa	Known RBP	13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	KRT32	Q14532	448 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	RUFY3	Q7L099	469 aa		13.34	□□□□□ -0.27
CLN3-238	ENST00000569430	KIF2A	O00139	706 aa	Predicted RBP	13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms