RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 STYK1Q6J9G0 422 aa22.45■■□□□ 1.18
CLN3-211ENST00000564091 PRPF40BQ6NWY9 871 aaKnown RBP22.45■■□□□ 1.18
CLN3-211ENST00000564091 CLEC4GQ6UXB4 293 aa22.45■■□□□ 1.18
CLN3-211ENST00000564091 TAF7Q15545 349 aaPredicted RBP22.44■■□□□ 1.18
CLN3-211ENST00000564091 DPY19L2Q6NUT2 758 aa22.44■■□□□ 1.18
CLN3-211ENST00000564091 MASTLQ96GX5 879 aa22.44■■□□□ 1.18
CLN3-211ENST00000564091 TAOK3Q9H2K8 898 aa22.44■■□□□ 1.18
CLN3-211ENST00000564091 ZNF652Q9Y2D9 606 aa22.43■■□□□ 1.18
CLN3-211ENST00000564091 PCNTO95613 3336 aa22.42■■□□□ 1.18
CLN3-211ENST00000564091 FAM177BA6PVY3 158 aa22.42■■□□□ 1.18
CLN3-211ENST00000564091 NIP7Q9Y221 180 aaKnown RBP eCLIP22.42■■□□□ 1.18
CLN3-211ENST00000564091 VIRMAQ69YN4 1812 aaKnown RBP22.42■■□□□ 1.18
CLN3-211ENST00000564091 SIPA1L3O60292 1781 aaPredicted RBP22.41■■□□□ 1.18
CLN3-211ENST00000564091 SCN7AQ01118 1682 aa22.4■■□□□ 1.18
CLN3-211ENST00000564091 LTBP3Q9NS15 1303 aa22.4■■□□□ 1.18
CLN3-211ENST00000564091 HLFQ16534 295 aa22.4■■□□□ 1.18
CLN3-211ENST00000564091 TPTE2Q6XPS3 522 aa22.4■■□□□ 1.18
CLN3-211ENST00000564091 JMYQ8N9B5 988 aa22.4■■□□□ 1.18
CLN3-211ENST00000564091 SBF1O95248 1867 aa22.4■■□□□ 1.18
CLN3-211ENST00000564091 C7orf43Q8WVR3 580 aa22.39■■□□□ 1.17
CLN3-211ENST00000564091 DDNO94850 711 aaPredicted RBP22.38■■□□□ 1.17
CLN3-211ENST00000564091 SOGA3Q5TF21 947 aa22.38■■□□□ 1.17
CLN3-211ENST00000564091 NGEFQ8N5V2 710 aa22.38■■□□□ 1.17
CLN3-211ENST00000564091 DLEC1Q9Y238 1755 aa22.38■■□□□ 1.17
CLN3-211ENST00000564091 NPR1P16066 1061 aa22.37■■□□□ 1.17
CLN3-211ENST00000564091 THUMPD2Q9BTF0 503 aaKnown RBP22.37■■□□□ 1.17
CLN3-211ENST00000564091 ANKRD31Q8N7Z5 1873 aa22.37■■□□□ 1.17
CLN3-211ENST00000564091 KLRG2A4D1S0 409 aaPredicted RBP22.36■■□□□ 1.17
CLN3-211ENST00000564091 NEFMP07197 916 aa22.36■■□□□ 1.17
CLN3-211ENST00000564091 OLFM4Q6UX06 510 aa22.36■■□□□ 1.17
CLN3-211ENST00000564091 PLEKHF1Q96S99 279 aa22.36■■□□□ 1.17
CLN3-211ENST00000564091 RGL2O15211 777 aa22.35■■□□□ 1.17
CLN3-211ENST00000564091 CCDC93Q567U6 631 aa22.35■■□□□ 1.17
CLN3-211ENST00000564091 TNRC6CQ9HCJ0 1690 aaKnown RBP22.35■■□□□ 1.17
CLN3-211ENST00000564091 GTF2E1P29083 439 aaPredicted RBP22.34■■□□□ 1.17
CLN3-211ENST00000564091 PNISRQ8TF01 805 aaKnown RBP22.34■■□□□ 1.17
CLN3-211ENST00000564091 RRP7AQ9Y3A4 280 aaKnown RBP22.34■■□□□ 1.17
CLN3-211ENST00000564091 COL11A2P13942 1736 aaPredicted RBP22.34■■□□□ 1.17
CLN3-211ENST00000564091 WDR90Q96KV7 1748 aa22.34■■□□□ 1.17
CLN3-211ENST00000564091 POTEIP0CG38 1075 aa22.33■■□□□ 1.17
CLN3-211ENST00000564091 POTEJP0CG39 1038 aa22.33■■□□□ 1.17
CLN3-211ENST00000564091 EIF4A1P60842 406 aaKnown RBP22.33■■□□□ 1.17
CLN3-211ENST00000564091 NFE2L2Q16236 605 aa22.33■■□□□ 1.17
CLN3-211ENST00000564091 ZNF277Q9NRM2 450 aaPredicted RBP22.33■■□□□ 1.17
CLN3-211ENST00000564091 TTLL7Q6ZT98 887 aa22.32■■□□□ 1.16
CLN3-211ENST00000564091 MYL6BP14649 208 aa22.31■■□□□ 1.16
CLN3-211ENST00000564091 FKBP4Q02790 459 aaKnown RBP eCLIP22.31■■□□□ 1.16
CLN3-211ENST00000564091 COL13A1Q5TAT6 717 aaPredicted RBP22.31■■□□□ 1.16
CLN3-211ENST00000564091 NUTM1Q86Y26 1132 aa22.31■■□□□ 1.16
CLN3-211ENST00000564091 CHADLQ6NUI6 762 aa22.3■■□□□ 1.16
CLN3-211ENST00000564091 SLX4Q8IY92 1834 aa22.29■■□□□ 1.16
CLN3-211ENST00000564091 ERVV-1B6SEH8 477 aa22.29■■□□□ 1.16
CLN3-211ENST00000564091 MAP3K15Q6ZN16 1313 aa22.29■■□□□ 1.16
CLN3-211ENST00000564091 GPTP24298 496 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 ALDH1B1P30837 517 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 KIF6Q6ZMV9 814 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 RTKN2Q8IZC4 609 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 ZBTB3Q9H5J0 574 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 ZNF541Q9H0D2 1346 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 MAPK8IP3Q9UPT6 1336 aa22.28■■□□□ 1.16
CLN3-211ENST00000564091 ABCC12Q96J65 1359 aa22.27■■□□□ 1.16
CLN3-211ENST00000564091 TIAM2Q8IVF5 1701 aa22.27■■□□□ 1.16
CLN3-211ENST00000564091 NYXQ9GZU5 481 aa22.27■■□□□ 1.16
CLN3-211ENST00000564091 BCORQ6W2J9 1755 aa22.27■■□□□ 1.16
CLN3-211ENST00000564091 IQCA1LA6NCM1 817 aa22.26■■□□□ 1.15
CLN3-211ENST00000564091 SYNE4Q8N205 404 aa22.26■■□□□ 1.15
CLN3-211ENST00000564091 L3MBTL3Q96JM7 780 aaPredicted RBP22.26■■□□□ 1.15
CLN3-211ENST00000564091 TAF1DQ9H5J8 278 aaPredicted RBP22.26■■□□□ 1.15
CLN3-211ENST00000564091 CRY2Q49AN0 593 aa22.25■■□□□ 1.15
CLN3-211ENST00000564091 SUSD4Q5VX71 490 aa22.25■■□□□ 1.15
CLN3-211ENST00000564091 PNNQ9H307 717 aaKnown RBP22.25■■□□□ 1.15
CLN3-211ENST00000564091 FER1L6Q2WGJ9 1857 aa22.25■■□□□ 1.15
CLN3-211ENST00000564091 UBN2Q6ZU65 1347 aa22.25■■□□□ 1.15
CLN3-211ENST00000564091 HSPA1AP0DMV8 641 aaKnown RBP22.24■■□□□ 1.15
CLN3-211ENST00000564091 HSPA1BP0DMV9 641 aaKnown RBP22.24■■□□□ 1.15
CLN3-211ENST00000564091 IARSP41252 1262 aaKnown RBP22.24■■□□□ 1.15
CLN3-211ENST00000564091 TSPYL4Q9UJ04 414 aa22.24■■□□□ 1.15
CLN3-211ENST00000564091 LDHDQ86WU2 507 aa22.23■■□□□ 1.15
CLN3-211ENST00000564091 CREBZFQ9NS37 354 aa22.23■■□□□ 1.15
CLN3-211ENST00000564091 MKRN1Q9UHC7 482 aaKnown RBP22.23■■□□□ 1.15
CLN3-211ENST00000564091 RIPK4P57078 832 aa22.22■■□□□ 1.15
CLN3-211ENST00000564091 EAPPQ56P03 285 aaPredicted RBP22.22■■□□□ 1.15
CLN3-211ENST00000564091 SLC51AQ86UW1 340 aa22.22■■□□□ 1.15
CLN3-211ENST00000564091 ZNF34Q8IZ26 560 aa22.22■■□□□ 1.15
CLN3-211ENST00000564091 FZD9O00144 591 aa22.21■■□□□ 1.15
CLN3-211ENST00000564091 EIF2S2P20042 333 aaKnown RBP22.21■■□□□ 1.15
CLN3-211ENST00000564091 C3orf67Q6ZVT6 689 aa22.21■■□□□ 1.15
CLN3-211ENST00000564091 RPGRQ92834 1020 aaKnown RBP22.21■■□□□ 1.15
CLN3-211ENST00000564091 HACL1Q9UJ83 578 aa22.21■■□□□ 1.15
CLN3-211ENST00000564091 CCDC88AQ3V6T2 1871 aa22.2■■□□□ 1.14
CLN3-211ENST00000564091 TCERG1O14776 1098 aaKnown RBP22.2■■□□□ 1.14
CLN3-211ENST00000564091 HOXA10P31260 410 aaPredicted RBP22.2■■□□□ 1.14
CLN3-211ENST00000564091 PDIA6Q15084 440 aa22.2■■□□□ 1.14
CLN3-211ENST00000564091 GIGYF2Q6Y7W6 1299 aaKnown RBP22.2■■□□□ 1.14
CLN3-211ENST00000564091 PSMD1Q99460 953 aa22.2■■□□□ 1.14
CLN3-211ENST00000564091 NTSR2O95665 410 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 ANXA1P04083 346 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 EPHX2P34913 555 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 PROSER3Q2NL68 480 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 LRP10Q7Z4F1 713 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms