RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 LNPKQ9C0E8 428 aa26.57■■□□□ 1.84
CLN3-209ENST00000561689 LOC102724428A0A0B4J2F2 783 aa26.56■■□□□ 1.84
CLN3-209ENST00000561689 PNMA6EA0A0J9YXQ4 647 aa26.56■■□□□ 1.84
CLN3-209ENST00000561689 NEURL1BA8MQ27 555 aa26.56■■□□□ 1.84
CLN3-209ENST00000561689 SIK1P57059 783 aa26.56■■□□□ 1.84
CLN3-209ENST00000561689 ATP8B2P98198 1209 aa26.56■■□□□ 1.84
CLN3-209ENST00000561689 CHD1LQ86WJ1 897 aa26.56■■□□□ 1.84
CLN3-209ENST00000561689 PALLDQ8WX93 1383 aa26.55■■□□□ 1.84
CLN3-209ENST00000561689 PDE4AP27815 886 aa26.55■■□□□ 1.84
CLN3-209ENST00000561689 ZBTB3Q9H5J0 574 aa26.55■■□□□ 1.84
CLN3-209ENST00000561689 ATP5J2-PTCD1G3V325 749 aa26.55■■□□□ 1.84
CLN3-209ENST00000561689 ATP6V1AP38606 617 aa26.55■■□□□ 1.84
CLN3-209ENST00000561689 GRM8O00222 908 aa26.54■■□□□ 1.84
CLN3-209ENST00000561689 GCKRQ14397 625 aa26.53■■□□□ 1.84
CLN3-209ENST00000561689 SMARCC1Q92922 1105 aaPredicted RBP26.53■■□□□ 1.84
CLN3-209ENST00000561689 ZBTB1Q9Y2K1 713 aa26.53■■□□□ 1.84
CLN3-209ENST00000561689 ARXQ96QS3 562 aa26.51■■□□□ 1.83
CLN3-209ENST00000561689 APBB1O00213 710 aa26.51■■□□□ 1.83
CLN3-209ENST00000561689 ITPK1Q13572 414 aa26.51■■□□□ 1.83
CLN3-209ENST00000561689 PPP1R42Q7Z4L9 355 aa26.51■■□□□ 1.83
CLN3-209ENST00000561689 UTYO14607 1347 aa26.5■■□□□ 1.83
CLN3-209ENST00000561689 BCL11AQ9H165 835 aa26.49■■□□□ 1.83
CLN3-209ENST00000561689 JARID2Q92833 1246 aaPredicted RBP26.48■■□□□ 1.83
CLN3-209ENST00000561689 SUCLG2Q96I99 432 aa26.48■■□□□ 1.83
CLN3-209ENST00000561689 TJP1Q07157 1748 aa26.48■■□□□ 1.83
CLN3-209ENST00000561689 SRGAP3O43295 1099 aa26.47■■□□□ 1.83
CLN3-209ENST00000561689 KIF6Q6ZMV9 814 aa26.47■■□□□ 1.83
CLN3-209ENST00000561689 EXOC6BQ9Y2D4 811 aa26.47■■□□□ 1.83
CLN3-209ENST00000561689 ARFGEF2Q9Y6D5 1785 aa26.47■■□□□ 1.83
CLN3-209ENST00000561689 INTS5Q6P9B9 1019 aaKnown RBP26.47■■□□□ 1.83
CLN3-209ENST00000561689 SSH3Q8TE77 659 aa26.47■■□□□ 1.83
CLN3-209ENST00000561689 CRKLP46109 303 aaKnown RBP26.46■■□□□ 1.83
CLN3-209ENST00000561689 KAZALD1Q96I82 304 aa26.46■■□□□ 1.83
CLN3-209ENST00000561689 BACH2Q9BYV9 841 aa26.46■■□□□ 1.83
CLN3-209ENST00000561689 HDAC5Q9UQL6 1122 aa26.46■■□□□ 1.83
CLN3-209ENST00000561689 CCDC87Q9NVE4 849 aa26.46■■□□□ 1.83
CLN3-209ENST00000561689 IBTKQ9P2D0 1353 aaPredicted RBP26.45■■□□□ 1.83
CLN3-209ENST00000561689 SMARCA5O60264 1052 aaPredicted RBP26.45■■□□□ 1.82
CLN3-209ENST00000561689 KCNQ4P56696 695 aa26.45■■□□□ 1.82
CLN3-209ENST00000561689 POLA2Q14181 598 aa26.45■■□□□ 1.82
CLN3-209ENST00000561689 A0A087WZG4 1122 aa26.44■■□□□ 1.82
CLN3-209ENST00000561689 IL6STP40189 918 aaPredicted RBP26.44■■□□□ 1.82
CLN3-209ENST00000561689 ZBTB47Q9UFB7 747 aaPredicted RBP26.44■■□□□ 1.82
CLN3-209ENST00000561689 ZNF772Q68DY9 489 aaPredicted RBP26.44■■□□□ 1.82
CLN3-209ENST00000561689 UBE3BQ7Z3V4 1068 aa26.44■■□□□ 1.82
CLN3-209ENST00000561689 BICC1Q9H694 974 aaKnown RBP26.44■■□□□ 1.82
CLN3-209ENST00000561689 MAP3K15Q6ZN16 1313 aa26.43■■□□□ 1.82
CLN3-209ENST00000561689 FAM161AQ3B820 660 aa26.43■■□□□ 1.82
CLN3-209ENST00000561689 NPM2Q86SE8 214 aaKnown RBP26.43■■□□□ 1.82
CLN3-209ENST00000561689 TCIRG1Q13488 830 aa26.42■■□□□ 1.82
CLN3-209ENST00000561689 CWC25Q9NXE8 425 aaPredicted RBP26.42■■□□□ 1.82
CLN3-209ENST00000561689 MTX1Q13505 466 aa26.42■■□□□ 1.82
CLN3-209ENST00000561689 C8orf34Q49A92 452 aa26.42■■□□□ 1.82
CLN3-209ENST00000561689 TBC1D2BQ9UPU7 963 aa26.42■■□□□ 1.82
CLN3-209ENST00000561689 NUP188Q5SRE5 1749 aa26.41■■□□□ 1.82
CLN3-209ENST00000561689 HLFQ16534 295 aa26.41■■□□□ 1.82
CLN3-209ENST00000561689 C16orf71Q8IYS4 520 aaPredicted RBP26.41■■□□□ 1.82
CLN3-209ENST00000561689 EIF5P55010 431 aaKnown RBP26.4■■□□□ 1.82
CLN3-209ENST00000561689 EPHA10Q5JZY3 1008 aa26.4■■□□□ 1.82
CLN3-209ENST00000561689 SURF6O75683 361 aaKnown RBP26.4■■□□□ 1.82
CLN3-209ENST00000561689 RTL5Q5HYW3 569 aaPredicted RBP26.4■■□□□ 1.82
CLN3-209ENST00000561689 DZIP3Q86Y13 1208 aaKnown RBP26.4■■□□□ 1.82
CLN3-209ENST00000561689 CCDC191Q8NCU4 936 aa26.4■■□□□ 1.82
CLN3-209ENST00000561689 LINC00116Q8NCU8 138 aa26.4■■□□□ 1.82
CLN3-209ENST00000561689 ISCA1Q9BUE6 129 aa26.4■■□□□ 1.82
CLN3-209ENST00000561689 KRT27Q7Z3Y8 459 aa26.39■■□□□ 1.82
CLN3-209ENST00000561689 CASP7P55210 303 aa26.38■■□□□ 1.81
CLN3-209ENST00000561689 RBM6P78332 1123 aaKnown RBP26.38■■□□□ 1.81
CLN3-209ENST00000561689 GIGYF2Q6Y7W6 1299 aaKnown RBP26.38■■□□□ 1.81
CLN3-209ENST00000561689 NHSQ6T4R5 1651 aa26.38■■□□□ 1.81
CLN3-209ENST00000561689 H7C1W4 665 aa26.38■■□□□ 1.81
CLN3-209ENST00000561689 OTUD7AQ8TE49 926 aaPredicted RBP26.37■■□□□ 1.81
CLN3-209ENST00000561689 LRRCC1Q9C099 1032 aa26.37■■□□□ 1.81
CLN3-209ENST00000561689 BTAF1O14981 1849 aa26.36■■□□□ 1.81
CLN3-209ENST00000561689 AFDNP55196 1824 aaKnown RBP26.36■■□□□ 1.81
CLN3-209ENST00000561689 EP400Q96L91 3159 aa26.35■■□□□ 1.81
CLN3-209ENST00000561689 GPTP24298 496 aa26.35■■□□□ 1.81
CLN3-209ENST00000561689 TRIM28Q13263 835 aaKnown RBP26.35■■□□□ 1.81
CLN3-209ENST00000561689 PLEKHM2Q8IWE5 1019 aa26.35■■□□□ 1.81
CLN3-209ENST00000561689 BCL11BQ9C0K0 894 aaPredicted RBP26.35■■□□□ 1.81
CLN3-209ENST00000561689 CCNL1Q9UK58 526 aaPredicted RBP26.35■■□□□ 1.81
CLN3-209ENST00000561689 ERVV-1B6SEH8 477 aa26.34■■□□□ 1.81
CLN3-209ENST00000561689 FAM196AQ6ZSG2 479 aa26.34■■□□□ 1.81
CLN3-209ENST00000561689 PA2G4Q9UQ80 394 aaKnown RBP26.34■■□□□ 1.81
CLN3-209ENST00000561689 CICQ96RK0 1608 aaPredicted RBP26.33■■□□□ 1.81
CLN3-209ENST00000561689 HSP90AB3PQ58FF7 597 aa26.33■■□□□ 1.8
CLN3-209ENST00000561689 RAB11FIP3O75154 756 aa26.32■■□□□ 1.8
CLN3-209ENST00000561689 NOP58Q9Y2X3 529 aaKnown RBP26.32■■□□□ 1.8
CLN3-209ENST00000561689 COL15A1P39059 1388 aa26.32■■□□□ 1.8
CLN3-209ENST00000561689 FBXO41Q8TF61 875 aa26.31■■□□□ 1.8
CLN3-209ENST00000561689 IL1RAPL2Q9NP60 686 aa26.31■■□□□ 1.8
CLN3-209ENST00000561689 RABL6Q3YEC7 729 aaPredicted RBP26.31■■□□□ 1.8
CLN3-209ENST00000561689 MYH14Q7Z406 1995 aaKnown RBP26.31■■□□□ 1.8
CLN3-209ENST00000561689 OS9Q13438 667 aaPredicted RBP26.3■■□□□ 1.8
CLN3-209ENST00000561689 NLRP10Q86W26 655 aa26.3■■□□□ 1.8
CLN3-209ENST00000561689 FOXO4P98177 505 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 HSP90AB4PQ58FF6 505 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 KLHDC4Q8TBB5 520 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 RHPN1Q8TCX5 695 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 FAM89AQ96GI7 184 aa26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms