RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CHD2O14647 1828 aaKnown RBP6.67□□□□□ -1.34
VPS13C-209ENST00000560637 HTATSF1O43719 755 aaKnown RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 IDH1O75874 414 aaKnown RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 RBM6P78332 1123 aaKnown RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 C16orf71Q8IYS4 520 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 LRRCC1Q9C099 1032 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 STK32BQ9NY57 414 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 STRCP1A6NGW2 1772 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 NRXN1Q9ULB1 1477 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 GRM8O00222 908 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 CT47B1P0C2W7 299 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 NBPF14Q5TI25 921 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 NSFL1CQ9UNZ2 370 aaKnown RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 AHDC1Q5TGY3 1603 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 SETBP1Q9Y6X0 1596 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 F8W031 263 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 IRS4O14654 1257 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-209ENST00000560637 ZBTB7AO95365 584 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 TTC39AQ5SRH9 613 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 SYNE4Q8N205 404 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 IL16Q14005 1332 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 TECPR2O15040 1411 aa6.66□□□□□ -1.34
VPS13C-209ENST00000560637 ERVV-2B6SEH9 535 aa6.65□□□□□ -1.34
VPS13C-209ENST00000560637 RIMBP2O15034 1052 aa6.65□□□□□ -1.34
VPS13C-209ENST00000560637 PDE4AP27815 886 aa6.65□□□□□ -1.34
VPS13C-209ENST00000560637 NDUFB9Q9Y6M9 179 aa6.65□□□□□ -1.34
VPS13C-209ENST00000560637 XIRP1Q702N8 1843 aaKnown RBP6.65□□□□□ -1.34
VPS13C-209ENST00000560637 CDC42BPGQ6DT37 1551 aa6.65□□□□□ -1.34
VPS13C-209ENST00000560637 SPATA31A6Q5VVP1 1343 aa6.65□□□□□ -1.34
VPS13C-209ENST00000560637 DDX46Q7L014 1031 aaKnown RBP6.65□□□□□ -1.35
VPS13C-209ENST00000560637 NLRP3Q96P20 1036 aa6.65□□□□□ -1.35
VPS13C-209ENST00000560637 ATG3Q9NT62 314 aa6.65□□□□□ -1.35
VPS13C-209ENST00000560637 RBM19Q9Y4C8 960 aaKnown RBP6.65□□□□□ -1.35
VPS13C-209ENST00000560637 ANKRD18BA2A2Z9 1011 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 HSP90B1P14625 803 aaKnown RBP6.64□□□□□ -1.35
VPS13C-209ENST00000560637 FOSBP53539 338 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 HSP90AB4PQ58FF6 505 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 HSP90AB3PQ58FF7 597 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 LINS1Q8NG48 757 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 BICC1Q9H694 974 aaKnown RBP6.64□□□□□ -1.35
VPS13C-209ENST00000560637 PNPLA6Q8IY17 1366 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 PPLO60437 1756 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 TAF5LO75529 589 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 NCLP19338 710 aaKnown RBP6.64□□□□□ -1.35
VPS13C-209ENST00000560637 RRP12Q5JTH9 1297 aaKnown RBP6.64□□□□□ -1.35
VPS13C-209ENST00000560637 TPTE2Q6XPS3 522 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 CNBD1Q8NA66 436 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 UTP14AQ9BVJ6 771 aaKnown RBP6.64□□□□□ -1.35
VPS13C-209ENST00000560637 RAI14Q9P0K7 980 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 SPATA31A1Q5TZJ5 1347 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 SHPRHQ149N8 1683 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 MCCP23508 829 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 CCDC158Q5M9N0 1113 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 CWC27Q6UX04 472 aaKnown RBP6.64□□□□□ -1.35
VPS13C-209ENST00000560637 CHD1LQ86WJ1 897 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 PARP3Q9Y6F1 533 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 PALLDQ8WX93 1383 aa6.64□□□□□ -1.35
VPS13C-209ENST00000560637 CDK12Q9NYV4 1490 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-209ENST00000560637 OVOS2A0A0J9YW53 1432 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 OVOS2Q6IE36 1432 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 PTPRCP08575 1304 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 TIMM10P62072 90 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 LRP2BPQ9P2M1 347 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 HLFQ16534 295 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 USP31Q70CQ4 1352 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 PNMA6EA0A0J9YXQ4 647 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 ERC2O15083 957 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 ST5P78524 1137 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 BECN1Q14457 450 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 VPS72Q15906 364 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 ERICH6BQ5W0A0 696 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 IFNLR1Q8IU57 520 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-209ENST00000560637 RPAP2Q8IXW5 612 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-209ENST00000560637 SUCLG2Q96I99 432 aa6.63□□□□□ -1.35
VPS13C-209ENST00000560637 PHLPP1O60346 1717 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 XRN1Q8IZH2 1706 aaKnown RBP6.62□□□□□ -1.35
VPS13C-209ENST00000560637 ROBO1Q9Y6N7 1651 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 SNAP23O00161 211 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 OTUD7AQ8TE49 926 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-209ENST00000560637 NOL10Q9BSC4 688 aaKnown RBP6.62□□□□□ -1.35
VPS13C-209ENST00000560637 CRB1P82279 1406 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 RTL1A6NKG5 1358 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 ATP2B2Q01814 1243 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 TXNRD1Q16881 649 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 RBM26Q5T8P6 1007 aaKnown RBP6.62□□□□□ -1.35
VPS13C-209ENST00000560637 ZSCAN29Q8IWY8 852 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-209ENST00000560637 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.62□□□□□ -1.358e-9■■■■□ 20.8
VPS13C-209ENST00000560637 DLC1Q96QB1 1528 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 CD163L1Q9NR16 1453 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 SH3TC1Q8TE82 1336 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 GOLIM4O00461 696 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 R3HDM1Q15032 1099 aaKnown RBP6.62□□□□□ -1.35
VPS13C-209ENST00000560637 ANKRD18AQ8IVF6 992 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 HSCBQ8IWL3 235 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 PLBD2Q8NHP8 589 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 SSH2Q76I76 1423 aa6.62□□□□□ -1.35
VPS13C-209ENST00000560637 SPATA31A5Q5VU36 1347 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 SPATA31A7Q8IWB4 1347 aa6.61□□□□□ -1.35
VPS13C-209ENST00000560637 PPFIA3O75145 1194 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms