RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 SENP3-EIF4A1A0A087X0R7 540 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 SSFA2P28290 1259 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 PLCB2Q00722 1185 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 DDX12PQ92771 950 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 FBXW7Q969H0 707 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 TAF1LQ8IZX4 1826 aa11.97□□□□□ -0.49
VRK1-206ENST00000557222 SPDYE16A6NNV3 312 aaPredicted RBP11.96□□□□□ -0.49
VRK1-206ENST00000557222 IFNL2Q8IZJ0 200 aa11.96□□□□□ -0.49
VRK1-206ENST00000557222 EYA1Q99502 592 aa11.96□□□□□ -0.49
VRK1-206ENST00000557222 VPS9D1Q9Y2B5 631 aa11.96□□□□□ -0.49
VRK1-206ENST00000557222 ITGB4P16144 1822 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 C4BP0C0L5 1744 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 LOC102724428A0A0B4J2F2 783 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 SIK1P57059 783 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 MSL1Q68DK7 614 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 EPAS1Q99814 870 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 SLC4A5Q9BY07 1137 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 TMOD3Q9NYL9 352 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 POLKQ9UBT6 870 aa11.95□□□□□ -0.5
VRK1-206ENST00000557222 ANKRD26Q9UPS8 1709 aa11.94□□□□□ -0.5
VRK1-206ENST00000557222 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.94□□□□□ -0.5
VRK1-206ENST00000557222 PPM1GO15355 546 aaPredicted RBP11.94□□□□□ -0.5
VRK1-206ENST00000557222 PHKG2P15735 406 aa11.93□□□□□ -0.5
VRK1-206ENST00000557222 ZBED2Q9BTP6 218 aa11.93□□□□□ -0.5
VRK1-206ENST00000557222 TOGARAM1Q9Y4F4 1720 aa11.93□□□□□ -0.5
VRK1-206ENST00000557222 MAP2P11137 1827 aaKnown RBP11.93□□□□□ -0.5
VRK1-206ENST00000557222 UBR3Q6ZT12 1888 aa11.92□□□□□ -0.5
VRK1-206ENST00000557222 ERVV-2B6SEH9 535 aa11.92□□□□□ -0.5
VRK1-206ENST00000557222 HSP90AB1P08238 724 aaKnown RBP11.92□□□□□ -0.5
VRK1-206ENST00000557222 LINC00116Q8NCU8 138 aa11.92□□□□□ -0.5
VRK1-206ENST00000557222 ATP6V1AP38606 617 aa11.91□□□□□ -0.5
VRK1-206ENST00000557222 EIF4A2Q14240 407 aaKnown RBP11.91□□□□□ -0.5
VRK1-206ENST00000557222 RC3H1Q5TC82 1133 aaKnown RBP11.91□□□□□ -0.5
VRK1-206ENST00000557222 AMIGO3Q86WK7 504 aa11.91□□□□□ -0.5
VRK1-206ENST00000557222 ATG3Q9NT62 314 aa11.91□□□□□ -0.5
VRK1-206ENST00000557222 ASAP1Q9ULH1 1129 aa11.91□□□□□ -0.5
VRK1-206ENST00000557222 ADCY9O60503 1353 aa11.91□□□□□ -0.5
VRK1-206ENST00000557222 IGSF1Q8N6C5 1336 aa11.9□□□□□ -0.5
VRK1-206ENST00000557222 PPP1R3GB7ZBB8 358 aa11.9□□□□□ -0.5
VRK1-206ENST00000557222 COL9A1P20849 921 aa11.9□□□□□ -0.5
VRK1-206ENST00000557222 ITPK1Q13572 414 aa11.9□□□□□ -0.5
VRK1-206ENST00000557222 DCAF5Q96JK2 942 aa11.9□□□□□ -0.5
VRK1-206ENST00000557222 ATP10DQ9P241 1426 aa11.9□□□□□ -0.5
VRK1-206ENST00000557222 GNPATO15228 680 aa11.89□□□□□ -0.51
VRK1-206ENST00000557222 TGFB2P61812 414 aa11.89□□□□□ -0.51
VRK1-206ENST00000557222 NBR1Q14596 966 aa11.89□□□□□ -0.51
VRK1-206ENST00000557222 AMOTQ4VCS5 1084 aa11.89□□□□□ -0.51
VRK1-206ENST00000557222 PLEKHO1Q53GL0 409 aaPredicted RBP11.89□□□□□ -0.51
VRK1-206ENST00000557222 C6orf132Q5T0Z8 1188 aa11.89□□□□□ -0.51
VRK1-206ENST00000557222 NLGN1Q8N2Q7 840 aa11.89□□□□□ -0.51
VRK1-206ENST00000557222 GPBP1L1Q9HC44 474 aaPredicted RBP11.89□□□□□ -0.51
VRK1-206ENST00000557222 RTCBQ9Y3I0 505 aaKnown RBP11.89□□□□□ -0.51
VRK1-206ENST00000557222 ZNF831Q5JPB2 1677 aa11.88□□□□□ -0.51
VRK1-206ENST00000557222 TRAPPC3LQ5T215 181 aa11.88□□□□□ -0.51
VRK1-206ENST00000557222 BHMG1C9JSJ3 638 aaPredicted RBP11.87□□□□□ -0.51
VRK1-206ENST00000557222 EIF4G2P78344 907 aaKnown RBP eCLIP11.87□□□□□ -0.51
VRK1-206ENST00000557222 KDRP35968 1356 aa11.87□□□□□ -0.51
VRK1-206ENST00000557222 CNTNAP4Q9C0A0 1308 aa11.86□□□□□ -0.51
VRK1-206ENST00000557222 RPS6KA4O75676 772 aa11.86□□□□□ -0.51
VRK1-206ENST00000557222 MMP10P09238 476 aa11.86□□□□□ -0.51
VRK1-206ENST00000557222 KCNV2Q8TDN2 545 aa11.86□□□□□ -0.51
VRK1-206ENST00000557222 GRXCR2A6NFK2 248 aa11.85□□□□□ -0.51
VRK1-206ENST00000557222 SMIM5Q71RC9 77 aa11.85□□□□□ -0.51
VRK1-206ENST00000557222 SLC4A9Q96Q91 983 aa11.85□□□□□ -0.51
VRK1-206ENST00000557222 PANK3Q9H999 370 aa11.85□□□□□ -0.51
VRK1-206ENST00000557222 HSPA6P17066 643 aa11.84□□□□□ -0.51
VRK1-206ENST00000557222 TNNT2P45379 298 aaPredicted RBP11.84□□□□□ -0.51
VRK1-206ENST00000557222 CABP4P57796 275 aa11.84□□□□□ -0.51
VRK1-206ENST00000557222 PROX2Q3B8N5 592 aa11.84□□□□□ -0.51
VRK1-206ENST00000557222 ZNF530Q6P9A1 599 aaPredicted RBP11.84□□□□□ -0.51
VRK1-206ENST00000557222 ARHGEF1Q92888 912 aaKnown RBP11.84□□□□□ -0.51
VRK1-206ENST00000557222 CCDC87Q9NVE4 849 aa11.84□□□□□ -0.51
VRK1-206ENST00000557222 CICQ96RK0 1608 aaPredicted RBP11.84□□□□□ -0.51
VRK1-206ENST00000557222 KIF13BQ9NQT8 1826 aa11.83□□□□□ -0.51
VRK1-206ENST00000557222 MAP3K7O43318 606 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 GYS1P13807 737 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 RFC4P35249 363 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 MTHFSP49914 203 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 C1orf141Q5JVX7 400 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 MORC1Q86VD1 984 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 POLR3GLQ9BT43 218 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 PXDNLA1KZ92 1463 aa11.83□□□□□ -0.52
VRK1-206ENST00000557222 HSPA5P11021 654 aaKnown RBP11.82□□□□□ -0.52
VRK1-206ENST00000557222 TSR1Q2NL82 804 aaKnown RBP11.82□□□□□ -0.52
VRK1-206ENST00000557222 PARP3Q9Y6F1 533 aa11.82□□□□□ -0.52
VRK1-206ENST00000557222 KDM6AO15550 1401 aaPredicted RBP11.82□□□□□ -0.52
VRK1-206ENST00000557222 C10orf71Q711Q0 1435 aa11.82□□□□□ -0.52
VRK1-206ENST00000557222 KCTD12Q96CX2 325 aaKnown RBP11.81□□□□□ -0.52
VRK1-206ENST00000557222 KNSTRNQ9Y448 316 aa11.81□□□□□ -0.52
VRK1-206ENST00000557222 A0A0G2JLW4 131 aa11.8□□□□□ -0.52
VRK1-206ENST00000557222 NFATC2IPQ8NCF5 419 aa11.8□□□□□ -0.52
VRK1-206ENST00000557222 RABGEF1Q9UJ41 708 aa11.8□□□□□ -0.52
VRK1-206ENST00000557222 COL5A3P25940 1745 aaPredicted RBP11.8□□□□□ -0.52
VRK1-206ENST00000557222 OSBPP22059 807 aa11.79□□□□□ -0.52
VRK1-206ENST00000557222 IL13P35225 146 aa11.79□□□□□ -0.52
VRK1-206ENST00000557222 CRKLP46109 303 aaKnown RBP11.79□□□□□ -0.52
VRK1-206ENST00000557222 AKAP4Q5JQC9 854 aa11.79□□□□□ -0.52
VRK1-206ENST00000557222 IFFO2Q5TF58 517 aa11.79□□□□□ -0.52
VRK1-206ENST00000557222 SULT6B1Q6IMI4 303 aa11.79□□□□□ -0.52
VRK1-206ENST00000557222 MRPL50Q8N5N7 158 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms