RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 SRGNP10124 158 aa18.86■□□□□ 0.61
ACTN1-219ENST00000556432 L3MBTL3Q96JM7 780 aaPredicted RBP18.86■□□□□ 0.61
ACTN1-219ENST00000556432 TEX13AQ9BXU3 409 aaPredicted RBP18.86■□□□□ 0.61
ACTN1-219ENST00000556432 IL6STP40189 918 aaPredicted RBP18.85■□□□□ 0.61
ACTN1-219ENST00000556432 CCDC93Q567U6 631 aa18.85■□□□□ 0.61
ACTN1-219ENST00000556432 DIAPH1O60610 1272 aaKnown RBP18.84■□□□□ 0.61
ACTN1-219ENST00000556432 A1BGP04217 495 aa18.84■□□□□ 0.61
ACTN1-219ENST00000556432 ZNF790Q6PG37 636 aa18.84■□□□□ 0.61
ACTN1-219ENST00000556432 HACL1Q9UJ83 578 aa18.84■□□□□ 0.61
ACTN1-219ENST00000556432 ZNF541Q9H0D2 1346 aa18.83■□□□□ 0.61
ACTN1-219ENST00000556432 CAMTA2O94983 1202 aa18.83■□□□□ 0.6
ACTN1-219ENST00000556432 NBPF5PQ86XG9 351 aaPredicted RBP18.83■□□□□ 0.6
ACTN1-219ENST00000556432 ZNF277Q9NRM2 450 aaPredicted RBP18.83■□□□□ 0.6
ACTN1-219ENST00000556432 WBP1LQ9NX94 342 aa18.83■□□□□ 0.6
ACTN1-219ENST00000556432 SCN4AP35499 1836 aa18.83■□□□□ 0.6
ACTN1-219ENST00000556432 ITGBL1O95965 494 aaPredicted RBP18.82■□□□□ 0.6
ACTN1-219ENST00000556432 EPHX2P34913 555 aa18.82■□□□□ 0.6
ACTN1-219ENST00000556432 DZIP3Q86Y13 1208 aaKnown RBP18.82■□□□□ 0.6
ACTN1-219ENST00000556432 FMNL2Q96PY5 1086 aa18.82■□□□□ 0.6
ACTN1-219ENST00000556432 ABT1Q9ULW3 272 aaKnown RBP18.82■□□□□ 0.6
ACTN1-219ENST00000556432 FKBP4Q02790 459 aaKnown RBP eCLIP18.81■□□□□ 0.6
ACTN1-219ENST00000556432 FAM161AQ3B820 660 aa18.81■□□□□ 0.6
ACTN1-219ENST00000556432 ABHD8Q96I13 439 aa18.81■□□□□ 0.6
ACTN1-219ENST00000556432 ARFGEF2Q9Y6D5 1785 aa18.81■□□□□ 0.6
ACTN1-219ENST00000556432 GNAT3A8MTJ3 354 aa18.8■□□□□ 0.6
ACTN1-219ENST00000556432 HSPA8P11142 646 aaKnown RBP18.8■□□□□ 0.6
ACTN1-219ENST00000556432 NPR1P16066 1061 aa18.8■□□□□ 0.6
ACTN1-219ENST00000556432 DEFB115Q30KQ5 88 aa18.8■□□□□ 0.6
ACTN1-219ENST00000556432 MAP1SQ66K74 1059 aaPredicted RBP18.8■□□□□ 0.6
ACTN1-219ENST00000556432 CNTROBQ8N137 903 aa18.8■□□□□ 0.6
ACTN1-219ENST00000556432 RNF123Q5XPI4 1314 aa18.79■□□□□ 0.6
ACTN1-219ENST00000556432 U2SURPO15042 1029 aaKnown RBP18.79■□□□□ 0.6
ACTN1-219ENST00000556432 SLC34A2O95436 690 aa18.79■□□□□ 0.6
ACTN1-219ENST00000556432 PIP4K2AP48426 406 aaPredicted RBP18.79■□□□□ 0.6
ACTN1-219ENST00000556432 MAP2K1Q02750 393 aaPredicted RBP18.79■□□□□ 0.6
ACTN1-219ENST00000556432 AMER1Q5JTC6 1135 aaPredicted RBP18.79■□□□□ 0.6
ACTN1-219ENST00000556432 PAXIP1Q6ZW49 1069 aaPredicted RBP18.79■□□□□ 0.6
ACTN1-219ENST00000556432 PNMA8AQ86V59 439 aaPredicted RBP18.79■□□□□ 0.6
ACTN1-219ENST00000556432 ZNF652Q9Y2D9 606 aa18.79■□□□□ 0.6
ACTN1-219ENST00000556432 RASSF10A6NK89 507 aa18.78■□□□□ 0.6
ACTN1-219ENST00000556432 OLFM4Q6UX06 510 aa18.78■□□□□ 0.6
ACTN1-219ENST00000556432 RTKN2Q8IZC4 609 aa18.78■□□□□ 0.6
ACTN1-219ENST00000556432 IL17REQ8NFR9 667 aa18.78■□□□□ 0.6
ACTN1-219ENST00000556432 GAS2L2Q8NHY3 880 aa18.78■□□□□ 0.6
ACTN1-219ENST00000556432 WDR33Q9C0J8 1336 aaKnown RBP18.77■□□□□ 0.6
ACTN1-219ENST00000556432 FAM177BA6PVY3 158 aa18.77■□□□□ 0.6
ACTN1-219ENST00000556432 GRM1Q13255 1194 aa18.77■□□□□ 0.6
ACTN1-219ENST00000556432 C7orf43Q8WVR3 580 aa18.77■□□□□ 0.6
ACTN1-219ENST00000556432 BCORQ6W2J9 1755 aa18.76■□□□□ 0.59
ACTN1-219ENST00000556432 CC2D1BQ5T0F9 858 aaKnown RBP18.76■□□□□ 0.59
ACTN1-219ENST00000556432 BEGAINQ9BUH8 593 aa18.76■□□□□ 0.59
ACTN1-219ENST00000556432 CCDC85CA6NKD9 419 aa18.75■□□□□ 0.59
ACTN1-219ENST00000556432 BTBD11A6QL63 1104 aa18.75■□□□□ 0.59
ACTN1-219ENST00000556432 IARSP41252 1262 aaKnown RBP18.75■□□□□ 0.59
ACTN1-219ENST00000556432 KCNQ3O43525 872 aa18.74■□□□□ 0.59
ACTN1-219ENST00000556432 GTF2E1P29083 439 aaPredicted RBP18.74■□□□□ 0.59
ACTN1-219ENST00000556432 TRIM26Q12899 539 aaPredicted RBP18.74■□□□□ 0.59
ACTN1-219ENST00000556432 CNGB1Q14028 1251 aaPredicted RBP18.74■□□□□ 0.59
ACTN1-219ENST00000556432 CLEC4GQ6UXB4 293 aa18.74■□□□□ 0.59
ACTN1-219ENST00000556432 TPTE2Q6XPS3 522 aa18.74■□□□□ 0.59
ACTN1-219ENST00000556432 SYNE4Q8N205 404 aa18.74■□□□□ 0.59
ACTN1-219ENST00000556432 JDP2Q8WYK2 163 aa18.74■□□□□ 0.59
ACTN1-219ENST00000556432 NIP7Q9Y221 180 aaKnown RBP eCLIP18.74■□□□□ 0.59
ACTN1-219ENST00000556432 GJA3Q9Y6H8 435 aa18.74■□□□□ 0.59
ACTN1-219ENST00000556432 LMOD1P29536 600 aaPredicted RBP18.73■□□□□ 0.59
ACTN1-219ENST00000556432 GPC2Q8N158 579 aa18.73■□□□□ 0.59
ACTN1-219ENST00000556432 PCGF6Q9BYE7 350 aa18.73■□□□□ 0.59
ACTN1-219ENST00000556432 SIPA1L3O60292 1781 aaPredicted RBP18.73■□□□□ 0.59
ACTN1-219ENST00000556432 ADAMTSL1Q8N6G6 1762 aa18.73■□□□□ 0.59
ACTN1-219ENST00000556432 FZD9O00144 591 aa18.72■□□□□ 0.59
ACTN1-219ENST00000556432 CAPNS2Q96L46 248 aa18.72■□□□□ 0.59
ACTN1-219ENST00000556432 DDX21Q9NR30 783 aaKnown RBP eCLIP18.72■□□□□ 0.59
ACTN1-219ENST00000556432 USP16Q9Y5T5 823 aa18.72■□□□□ 0.59
ACTN1-219ENST00000556432 ALDH1B1P30837 517 aa18.71■□□□□ 0.59
ACTN1-219ENST00000556432 EIF6P56537 245 aaKnown RBP18.71■□□□□ 0.59
ACTN1-219ENST00000556432 MLLT1Q03111 559 aaPredicted RBP18.71■□□□□ 0.59
ACTN1-219ENST00000556432 PRAMEF22A3QJZ6 481 aa18.7■□□□□ 0.58
ACTN1-219ENST00000556432 KLRG2A4D1S0 409 aaPredicted RBP18.7■□□□□ 0.58
ACTN1-219ENST00000556432 ECE1P42892 770 aa18.7■□□□□ 0.58
ACTN1-219ENST00000556432 CLSPNQ9HAW4 1339 aa18.7■□□□□ 0.58
ACTN1-219ENST00000556432 SNRPA1P09661 255 aaKnown RBP18.69■□□□□ 0.58
ACTN1-219ENST00000556432 CFAP44Q96MT7 982 aa18.69■□□□□ 0.58
ACTN1-219ENST00000556432 CEMIPQ8WUJ3 1361 aa18.68■□□□□ 0.58
ACTN1-219ENST00000556432 CYP4F22Q6NT55 531 aa18.68■□□□□ 0.58
ACTN1-219ENST00000556432 GPR101Q96P66 508 aaPredicted RBP18.68■□□□□ 0.58
ACTN1-219ENST00000556432 TSKSQ9UJT2 592 aa18.68■□□□□ 0.58
ACTN1-219ENST00000556432 FMR1Q06787 632 aaKnown RBP eCLIP18.67■□□□□ 0.58
ACTN1-219ENST00000556432 PSMD1Q99460 953 aa18.67■□□□□ 0.58
ACTN1-219ENST00000556432 COL3A1P02461 1466 aaPredicted RBP18.66■□□□□ 0.58
ACTN1-219ENST00000556432 PRKAR2BP31323 418 aa18.66■□□□□ 0.58
ACTN1-219ENST00000556432 LARGE2Q8N3Y3 721 aa18.66■□□□□ 0.58
ACTN1-219ENST00000556432 RTF1Q92541 710 aaKnown RBP18.66■□□□□ 0.58
ACTN1-219ENST00000556432 KIF7Q2M1P5 1343 aa18.66■□□□□ 0.58
ACTN1-219ENST00000556432 TRAF5O00463 557 aa18.65■□□□□ 0.58
ACTN1-219ENST00000556432 EPS15P42566 896 aa18.65■□□□□ 0.58
ACTN1-219ENST00000556432 RPGRQ92834 1020 aaKnown RBP18.65■□□□□ 0.58
ACTN1-219ENST00000556432 PHACTR3Q96KR7 559 aa18.64■□□□□ 0.57
ACTN1-219ENST00000556432 THSD7BQ9C0I4 1608 aa18.63■□□□□ 0.57
ACTN1-219ENST00000556432 NBPF26B4DH59 902 aa18.63■□□□□ 0.57
ACTN1-219ENST00000556432 SCNN1DP51172 638 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms