RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 TPTE2Q6XPS3 522 aa15.5■□□□□ 0.07
VRK1-204ENST00000555351 CCDC146Q8IYE0 955 aa15.5■□□□□ 0.07
VRK1-204ENST00000555351 TRIM35Q9UPQ4 493 aa15.5■□□□□ 0.07
VRK1-204ENST00000555351 MAP3K15Q6ZN16 1313 aa15.49■□□□□ 0.07
VRK1-204ENST00000555351 ZC3H4Q9UPT8 1303 aaKnown RBP15.49■□□□□ 0.07
VRK1-204ENST00000555351 STYK1Q6J9G0 422 aa15.49■□□□□ 0.07
VRK1-204ENST00000555351 KIF6Q6ZMV9 814 aa15.49■□□□□ 0.07
VRK1-204ENST00000555351 NBPF5PQ86XG9 351 aaPredicted RBP15.49■□□□□ 0.07
VRK1-204ENST00000555351 IBTKQ9P2D0 1353 aaPredicted RBP15.49■□□□□ 0.07
VRK1-204ENST00000555351 KLRG2A4D1S0 409 aaPredicted RBP15.48■□□□□ 0.07
VRK1-204ENST00000555351 ZNF316A6NFI3 1004 aaPredicted RBP15.48■□□□□ 0.07
VRK1-204ENST00000555351 NPHP1O15259 732 aa15.48■□□□□ 0.07
VRK1-204ENST00000555351 HOXB7P09629 217 aa15.48■□□□□ 0.07
VRK1-204ENST00000555351 NIP7Q9Y221 180 aaKnown RBP eCLIP15.48■□□□□ 0.07
VRK1-204ENST00000555351 RRP7AQ9Y3A4 280 aaKnown RBP15.48■□□□□ 0.07
VRK1-204ENST00000555351 ARFGEF2Q9Y6D5 1785 aa15.48■□□□□ 0.07
VRK1-204ENST00000555351 COL11A2P13942 1736 aaPredicted RBP15.48■□□□□ 0.07
VRK1-204ENST00000555351 SBF1O95248 1867 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 SRGNP10124 158 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 CALD1Q05682 793 aaKnown RBP15.47■□□□□ 0.07
VRK1-204ENST00000555351 NEUROD2Q15784 382 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 RIC1Q4ADV7 1423 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 CNKSR1Q969H4 720 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 NYXQ9GZU5 481 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 NUP98P52948 1817 aa15.47■□□□□ 0.07
VRK1-204ENST00000555351 HLFQ16534 295 aa15.46■□□□□ 0.07
VRK1-204ENST00000555351 SOGA3Q5TF21 947 aa15.46■□□□□ 0.07
VRK1-204ENST00000555351 C9orf131Q5VYM1 1079 aa15.46■□□□□ 0.07
VRK1-204ENST00000555351 LRP10Q7Z4F1 713 aa15.46■□□□□ 0.07
VRK1-204ENST00000555351 MASTLQ96GX5 879 aa15.46■□□□□ 0.07
VRK1-204ENST00000555351 CFAP44Q96MT7 982 aa15.46■□□□□ 0.07
VRK1-204ENST00000555351 LMNB1P20700 586 aa15.45■□□□□ 0.06
VRK1-204ENST00000555351 PDIA6Q15084 440 aa15.45■□□□□ 0.06
VRK1-204ENST00000555351 GIGYF2Q6Y7W6 1299 aaKnown RBP15.45■□□□□ 0.06
VRK1-204ENST00000555351 ZNF622Q969S3 477 aaKnown RBP eCLIP15.45■□□□□ 0.062e-8■□□□□ 9.4
VRK1-204ENST00000555351 LTBP3Q9NS15 1303 aa15.44■□□□□ 0.06
VRK1-204ENST00000555351 MYL6BP14649 208 aa15.44■□□□□ 0.06
VRK1-204ENST00000555351 NPR1P16066 1061 aa15.44■□□□□ 0.06
VRK1-204ENST00000555351 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
VRK1-204ENST00000555351 TTLL7Q6ZT98 887 aa15.44■□□□□ 0.06
VRK1-204ENST00000555351 APAF1O14727 1248 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 ZNF853P0CG23 659 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 PARP10Q53GL7 1025 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 ZNF34Q8IZ26 560 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 DDX21Q9NR30 783 aaKnown RBP eCLIP15.43■□□□□ 0.06
VRK1-204ENST00000555351 IFT57Q9NWB7 429 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 RNF181Q9P0P0 153 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 FER1L6Q2WGJ9 1857 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 RNF123Q5XPI4 1314 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 KDM2BQ8NHM5 1336 aa15.43■□□□□ 0.06
VRK1-204ENST00000555351 EIF2S2P20042 333 aaKnown RBP15.42■□□□□ 0.06
VRK1-204ENST00000555351 GNAI1P63096 354 aa15.42■□□□□ 0.06
VRK1-204ENST00000555351 CCDC24Q8N4L8 307 aa15.42■□□□□ 0.06
VRK1-204ENST00000555351 NGEFQ8N5V2 710 aa15.42■□□□□ 0.06
VRK1-204ENST00000555351 CHMP4AQ9BY43 222 aa15.42■□□□□ 0.06
VRK1-204ENST00000555351 NFKBIEO00221 500 aa15.41■□□□□ 0.06
VRK1-204ENST00000555351 KIF3CO14782 793 aa15.41■□□□□ 0.06
VRK1-204ENST00000555351 GTF2E1P29083 439 aaPredicted RBP15.41■□□□□ 0.06
VRK1-204ENST00000555351 ALDH1B1P30837 517 aa15.41■□□□□ 0.06
VRK1-204ENST00000555351 CRY2Q49AN0 593 aa15.41■□□□□ 0.06
VRK1-204ENST00000555351 HSP90AB3PQ58FF7 597 aa15.41■□□□□ 0.06
VRK1-204ENST00000555351 PRPF40BQ6NWY9 871 aaKnown RBP15.41■□□□□ 0.06
VRK1-204ENST00000555351 ZNF526Q8TF50 670 aaPredicted RBP15.41■□□□□ 0.06
VRK1-204ENST00000555351 ZBTB3Q9H5J0 574 aa15.41■□□□□ 0.06
VRK1-204ENST00000555351 ANKRD36CQ5JPF3 1778 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 ANP32CO43423 234 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 C21orf2O43822 256 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 CCDC27Q2M243 656 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 PPP1R42Q7Z4L9 355 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 C7orf43Q8WVR3 580 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 DBF4Q9UBU7 674 aaPredicted RBP15.4■□□□□ 0.06
VRK1-204ENST00000555351 LAS1LQ9Y4W2 734 aaKnown RBP15.4■□□□□ 0.06
VRK1-204ENST00000555351 TNRC6CQ9HCJ0 1690 aaKnown RBP15.4■□□□□ 0.06
VRK1-204ENST00000555351 SLX4Q8IY92 1834 aa15.4■□□□□ 0.06
VRK1-204ENST00000555351 RASSF7Q02833 373 aa15.39■□□□□ 0.05
VRK1-204ENST00000555351 PROSER3Q2NL68 480 aa15.39■□□□□ 0.05
VRK1-204ENST00000555351 MBIPQ9NS73 344 aa15.39■□□□□ 0.05
VRK1-204ENST00000555351 UBN2Q6ZU65 1347 aa15.39■□□□□ 0.05
VRK1-204ENST00000555351 DICER1Q9UPY3 1922 aaKnown RBP15.39■□□□□ 0.05
VRK1-204ENST00000555351 TIAM2Q8IVF5 1701 aa15.38■□□□□ 0.05
VRK1-204ENST00000555351 TOMM70O94826 608 aa15.38■□□□□ 0.05
VRK1-204ENST00000555351 NTSR2O95665 410 aa15.38■□□□□ 0.05
VRK1-204ENST00000555351 HOXA10P31260 410 aaPredicted RBP15.38■□□□□ 0.05
VRK1-204ENST00000555351 GRIPAP1Q4V328 841 aa15.38■□□□□ 0.05
VRK1-204ENST00000555351 HDGFL1Q5TGJ6 251 aa15.38■□□□□ 0.05
VRK1-204ENST00000555351 COPS6Q7L5N1 327 aa15.38■□□□□ 0.05
VRK1-204ENST00000555351 CACNA1SQ13698 1873 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 GPTP24298 496 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 PRELPP51888 382 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 KRT24Q2M2I5 525 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 ERFEQ4G0M1 354 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 CCDC93Q567U6 631 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 SLC10A5Q5PT55 438 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 SUSD4Q5VX71 490 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 DUSP27Q5VZP5 1158 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 CC2D2BQ6DHV5 1058 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 XAGE3Q8WTP9 111 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 TAOK3Q9H2K8 898 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 HYPKQ9NX55 129 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 CHPF2Q9P2E5 772 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms