RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CAMTA2O94983 1202 aa17.63■□□□□ 0.41
VPS29-211ENST00000553128 MAP1SQ66K74 1059 aaPredicted RBP17.63■□□□□ 0.41
VPS29-211ENST00000553128 MASTLQ96GX5 879 aa17.63■□□□□ 0.41
VPS29-211ENST00000553128 CLEC11AQ9Y240 323 aa17.63■□□□□ 0.41
VPS29-211ENST00000553128 DEFB115Q30KQ5 88 aa17.62■□□□□ 0.41
VPS29-211ENST00000553128 ZNF277Q9NRM2 450 aaPredicted RBP17.62■□□□□ 0.41
VPS29-211ENST00000553128 A1BGP04217 495 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 EPHX2P34913 555 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 TTC5Q8N0Z6 440 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 SETDB2Q96T68 719 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 HACL1Q9UJ83 578 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 RNF123Q5XPI4 1314 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 WDR33Q9C0J8 1336 aaKnown RBP17.61■□□□□ 0.41
VPS29-211ENST00000553128 HEG1Q9ULI3 1381 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 ARFGEF2Q9Y6D5 1785 aa17.61■□□□□ 0.41
VPS29-211ENST00000553128 NPHP1O15259 732 aa17.6■□□□□ 0.41
VPS29-211ENST00000553128 IL6STP40189 918 aaPredicted RBP17.6■□□□□ 0.41
VPS29-211ENST00000553128 ST5P78524 1137 aa17.6■□□□□ 0.41
VPS29-211ENST00000553128 SOGA3Q5TF21 947 aa17.6■□□□□ 0.41
VPS29-211ENST00000553128 CNTROBQ8N137 903 aa17.6■□□□□ 0.41
VPS29-211ENST00000553128 FMR1Q06787 632 aaKnown RBP eCLIP17.59■□□□□ 0.41
VPS29-211ENST00000553128 CCDC93Q567U6 631 aa17.59■□□□□ 0.41
VPS29-211ENST00000553128 ZNF790Q6PG37 636 aa17.59■□□□□ 0.41
VPS29-211ENST00000553128 PIP4K2AP48426 406 aaPredicted RBP17.58■□□□□ 0.4
VPS29-211ENST00000553128 FKBP4Q02790 459 aaKnown RBP eCLIP17.58■□□□□ 0.4
VPS29-211ENST00000553128 CCDC85CA6NKD9 419 aa17.57■□□□□ 0.4
VPS29-211ENST00000553128 KCNQ3O43525 872 aa17.57■□□□□ 0.4
VPS29-211ENST00000553128 IL17REQ8NFR9 667 aa17.57■□□□□ 0.4
VPS29-211ENST00000553128 ABT1Q9ULW3 272 aaKnown RBP17.57■□□□□ 0.4
VPS29-211ENST00000553128 HSPA5P11021 654 aaKnown RBP17.56■□□□□ 0.4
VPS29-211ENST00000553128 MAP2K1Q02750 393 aaPredicted RBP17.56■□□□□ 0.4
VPS29-211ENST00000553128 BCORQ6W2J9 1755 aa17.56■□□□□ 0.4
VPS29-211ENST00000553128 FZD9O00144 591 aa17.55■□□□□ 0.4
VPS29-211ENST00000553128 MLLT1Q03111 559 aaPredicted RBP17.55■□□□□ 0.4
VPS29-211ENST00000553128 AMER1Q5JTC6 1135 aaPredicted RBP17.55■□□□□ 0.4
VPS29-211ENST00000553128 NBPF5PQ86XG9 351 aaPredicted RBP17.55■□□□□ 0.4
VPS29-211ENST00000553128 DZIP3Q86Y13 1208 aaKnown RBP17.55■□□□□ 0.4
VPS29-211ENST00000553128 TEX13AQ9BXU3 409 aaPredicted RBP17.55■□□□□ 0.4
VPS29-211ENST00000553128 DDX21Q9NR30 783 aaKnown RBP eCLIP17.55■□□□□ 0.4
VPS29-211ENST00000553128 NPR1P16066 1061 aa17.54■□□□□ 0.4
VPS29-211ENST00000553128 PNMA8AQ86V59 439 aaPredicted RBP17.54■□□□□ 0.4
VPS29-211ENST00000553128 TSKSQ9UJT2 592 aa17.54■□□□□ 0.4
VPS29-211ENST00000553128 KNSTRNQ9Y448 316 aa17.54■□□□□ 0.4
VPS29-211ENST00000553128 SIPA1L3O60292 1781 aaPredicted RBP17.53■□□□□ 0.4
VPS29-211ENST00000553128 LTBP1Q14766 1721 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 COL4A5P29400 1685 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 PRAMEF22A3QJZ6 481 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 KLRG2A4D1S0 409 aaPredicted RBP17.53■□□□□ 0.4
VPS29-211ENST00000553128 IARSP41252 1262 aaKnown RBP17.53■□□□□ 0.4
VPS29-211ENST00000553128 RGS19P49795 217 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 TEFQ10587 303 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 GRM1Q13255 1194 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 CYP4F22Q6NT55 531 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 SYNE4Q8N205 404 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 THSD7BQ9C0I4 1608 aa17.53■□□□□ 0.4
VPS29-211ENST00000553128 CAPNS2Q96L46 248 aa17.52■□□□□ 0.4
VPS29-211ENST00000553128 FMNL2Q96PY5 1086 aa17.52■□□□□ 0.4
VPS29-211ENST00000553128 USP16Q9Y5T5 823 aa17.52■□□□□ 0.4
VPS29-211ENST00000553128 SNED1Q8TER0 1413 aa17.52■□□□□ 0.4
VPS29-211ENST00000553128 TNRC18O15417 2968 aaPredicted RBP17.52■□□□□ 0.39
VPS29-211ENST00000553128 FAM177BA6PVY3 158 aa17.51■□□□□ 0.39
VPS29-211ENST00000553128 DIAPH1O60610 1272 aaKnown RBP17.51■□□□□ 0.39
VPS29-211ENST00000553128 PAXIP1Q6ZW49 1069 aaPredicted RBP17.51■□□□□ 0.39
VPS29-211ENST00000553128 SLC51AQ86UW1 340 aa17.51■□□□□ 0.39
VPS29-211ENST00000553128 RTKN2Q8IZC4 609 aa17.51■□□□□ 0.39
VPS29-211ENST00000553128 GPC2Q8N158 579 aa17.51■□□□□ 0.39
VPS29-211ENST00000553128 GNAT3A8MTJ3 354 aa17.5■□□□□ 0.39
VPS29-211ENST00000553128 TRAF5O00463 557 aa17.5■□□□□ 0.39
VPS29-211ENST00000553128 AOC2O75106 756 aa17.5■□□□□ 0.39
VPS29-211ENST00000553128 EIF4G2P78344 907 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS29-211ENST00000553128 CST9Q5W186 159 aa17.5■□□□□ 0.39
VPS29-211ENST00000553128 NPM2Q86SE8 214 aaKnown RBP17.5■□□□□ 0.39
VPS29-211ENST00000553128 GPR101Q96P66 508 aaPredicted RBP17.5■□□□□ 0.39
VPS29-211ENST00000553128 GJA3Q9Y6H8 435 aa17.5■□□□□ 0.39
VPS29-211ENST00000553128 EPS15P42566 896 aa17.49■□□□□ 0.39
VPS29-211ENST00000553128 SCNN1DP51172 638 aa17.48■□□□□ 0.39
VPS29-211ENST00000553128 CLEC4GQ6UXB4 293 aa17.48■□□□□ 0.39
VPS29-211ENST00000553128 BTBD11A6QL63 1104 aa17.47■□□□□ 0.39
VPS29-211ENST00000553128 TIMELESSQ9UNS1 1208 aa17.47■□□□□ 0.39
VPS29-211ENST00000553128 NIP7Q9Y221 180 aaKnown RBP eCLIP17.47■□□□□ 0.39
VPS29-211ENST00000553128 CEMIPQ8WUJ3 1361 aa17.47■□□□□ 0.39
VPS29-211ENST00000553128 COL3A1P02461 1466 aaPredicted RBP17.46■□□□□ 0.39
VPS29-211ENST00000553128 NBPF26B4DH59 902 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 HLFQ16534 295 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 NBPF10Q6P3W6 841 aaKnown RBP17.46■□□□□ 0.39
VPS29-211ENST00000553128 TPTE2Q6XPS3 522 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 NBPF15Q8N660 670 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 GAS2L2Q8NHY3 880 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 CFAP44Q96MT7 982 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 PSMD1Q99460 953 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 BEGAINQ9BUH8 593 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 MCOLN1Q9GZU1 580 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 PCDH10Q9P2E7 1040 aa17.46■□□□□ 0.39
VPS29-211ENST00000553128 ECE1P42892 770 aa17.45■□□□□ 0.38
VPS29-211ENST00000553128 JDP2Q8WYK2 163 aa17.45■□□□□ 0.38
VPS29-211ENST00000553128 ZNF652Q9Y2D9 606 aa17.45■□□□□ 0.38
VPS29-211ENST00000553128 TLL2Q9Y6L7 1015 aa17.45■□□□□ 0.38
VPS29-211ENST00000553128 ABCC12Q96J65 1359 aa17.44■□□□□ 0.38
VPS29-211ENST00000553128 U2SURPO15042 1029 aaKnown RBP17.44■□□□□ 0.38
VPS29-211ENST00000553128 LMOD1P29536 600 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms