RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 NEUROD2Q15784 382 aa24.46■■□□□ 1.51
CHMP1A-207ENST00000549328 RRP7AQ9Y3A4 280 aaKnown RBP24.46■■□□□ 1.51
CHMP1A-207ENST00000549328 ANKRD31Q8N7Z5 1873 aa24.45■■□□□ 1.51
CHMP1A-207ENST00000549328 ERVV-1B6SEH8 477 aa24.45■■□□□ 1.5
CHMP1A-207ENST00000549328 C9orf131Q5VYM1 1079 aa24.45■■□□□ 1.5
CHMP1A-207ENST00000549328 NBPF5PQ86XG9 351 aaPredicted RBP24.45■■□□□ 1.5
CHMP1A-207ENST00000549328 NIP7Q9Y221 180 aaKnown RBP eCLIP24.45■■□□□ 1.5
CHMP1A-207ENST00000549328 TPTE2Q6XPS3 522 aa24.44■■□□□ 1.5
CHMP1A-207ENST00000549328 CCDC24Q8N4L8 307 aa24.44■■□□□ 1.5
CHMP1A-207ENST00000549328 TRIM35Q9UPQ4 493 aa24.44■■□□□ 1.5
CHMP1A-207ENST00000549328 HLFQ16534 295 aa24.43■■□□□ 1.5
CHMP1A-207ENST00000549328 ZNF622Q969S3 477 aaKnown RBP eCLIP24.43■■□□□ 1.5
CHMP1A-207ENST00000549328 CHL1O00533 1208 aa24.42■■□□□ 1.5
CHMP1A-207ENST00000549328 NGEFQ8N5V2 710 aa24.42■■□□□ 1.5
CHMP1A-207ENST00000549328 MAP3K15Q6ZN16 1313 aa24.41■■□□□ 1.5
CHMP1A-207ENST00000549328 SRGNP10124 158 aa24.41■■□□□ 1.5
CHMP1A-207ENST00000549328 MYL6BP14649 208 aa24.41■■□□□ 1.5
CHMP1A-207ENST00000549328 KIF6Q6ZMV9 814 aa24.41■■□□□ 1.5
CHMP1A-207ENST00000549328 STYK1Q6J9G0 422 aa24.4■■□□□ 1.5
CHMP1A-207ENST00000549328 CNKSR1Q969H4 720 aa24.4■■□□□ 1.5
CHMP1A-207ENST00000549328 RNF181Q9P0P0 153 aa24.4■■□□□ 1.5
CHMP1A-207ENST00000549328 KLRG2A4D1S0 409 aaPredicted RBP24.39■■□□□ 1.49
CHMP1A-207ENST00000549328 TTLL7Q6ZT98 887 aa24.39■■□□□ 1.49
CHMP1A-207ENST00000549328 MASTLQ96GX5 879 aa24.39■■□□□ 1.49
CHMP1A-207ENST00000549328 SBF1O95248 1867 aa24.38■■□□□ 1.49
CHMP1A-207ENST00000549328 KIF3CO14782 793 aa24.37■■□□□ 1.49
CHMP1A-207ENST00000549328 EIF2S2P20042 333 aaKnown RBP24.37■■□□□ 1.49
CHMP1A-207ENST00000549328 LMNB1P20700 586 aa24.37■■□□□ 1.49
CHMP1A-207ENST00000549328 PDIA6Q15084 440 aa24.37■■□□□ 1.49
CHMP1A-207ENST00000549328 ZC3H4Q9UPT8 1303 aaKnown RBP24.36■■□□□ 1.49
CHMP1A-207ENST00000549328 COL11A2P13942 1736 aaPredicted RBP24.36■■□□□ 1.49
CHMP1A-207ENST00000549328 LRP10Q7Z4F1 713 aa24.36■■□□□ 1.49
CHMP1A-207ENST00000549328 NYXQ9GZU5 481 aa24.36■■□□□ 1.49
CHMP1A-207ENST00000549328 SENP3-EIF4A1A0A087X0R7 540 aa24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 C21orf2O43822 256 aa24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 RASSF7Q02833 373 aa24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 GIGYF2Q6Y7W6 1299 aaKnown RBP24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 CFAP44Q96MT7 982 aa24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 LAS1LQ9Y4W2 734 aaKnown RBP24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 NUP98P52948 1817 aa24.35■■□□□ 1.49
CHMP1A-207ENST00000549328 ZNF316A6NFI3 1004 aaPredicted RBP24.34■■□□□ 1.49
CHMP1A-207ENST00000549328 FAM177BA6PVY3 158 aa24.34■■□□□ 1.49
CHMP1A-207ENST00000549328 NFKBIEO00221 500 aa24.34■■□□□ 1.49
CHMP1A-207ENST00000549328 NPR1P16066 1061 aa24.34■■□□□ 1.49
CHMP1A-207ENST00000549328 GTF2E1P29083 439 aaPredicted RBP24.34■■□□□ 1.49
CHMP1A-207ENST00000549328 ZBTB3Q9H5J0 574 aa24.34■■□□□ 1.49
CHMP1A-207ENST00000549328 APAF1O14727 1248 aa24.33■■□□□ 1.49
CHMP1A-207ENST00000549328 SOGA3Q5TF21 947 aa24.33■■□□□ 1.49
CHMP1A-207ENST00000549328 PRPF40BQ6NWY9 871 aaKnown RBP24.33■■□□□ 1.49
CHMP1A-207ENST00000549328 ZNF34Q8IZ26 560 aa24.33■■□□□ 1.49
CHMP1A-207ENST00000549328 KDM2BQ8NHM5 1336 aa24.33■■□□□ 1.48
CHMP1A-207ENST00000549328 IBTKQ9P2D0 1353 aaPredicted RBP24.32■■□□□ 1.48
CHMP1A-207ENST00000549328 HOXB7P09629 217 aa24.32■■□□□ 1.48
CHMP1A-207ENST00000549328 PRELPP51888 382 aa24.31■■□□□ 1.48
CHMP1A-207ENST00000549328 PROSER3Q2NL68 480 aa24.31■■□□□ 1.48
CHMP1A-207ENST00000549328 NMRK2Q9NPI5 230 aa24.31■■□□□ 1.48
CHMP1A-207ENST00000549328 DDX21Q9NR30 783 aaKnown RBP eCLIP24.31■■□□□ 1.48
CHMP1A-207ENST00000549328 LTBP3Q9NS15 1303 aa24.31■■□□□ 1.48
CHMP1A-207ENST00000549328 CALD1Q05682 793 aaKnown RBP24.3■■□□□ 1.48
CHMP1A-207ENST00000549328 KRT24Q2M2I5 525 aa24.3■■□□□ 1.48
CHMP1A-207ENST00000549328 ZNF219Q9P2Y4 722 aaPredicted RBP24.3■■□□□ 1.48
CHMP1A-207ENST00000549328 SLX4Q8IY92 1834 aa24.3■■□□□ 1.48
CHMP1A-207ENST00000549328 TOMM70O94826 608 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 ZNF853P0CG23 659 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 GPTP24298 496 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 PARP10Q53GL7 1025 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 C7orf43Q8WVR3 580 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 UBN2Q6ZU65 1347 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 ARFGEF2Q9Y6D5 1785 aa24.29■■□□□ 1.48
CHMP1A-207ENST00000549328 FER1L6Q2WGJ9 1857 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 ANXA1P04083 346 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 ALDH1B1P30837 517 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 CRY2Q49AN0 593 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 SUSD4Q5VX71 490 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 COPS6Q7L5N1 327 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 NECTIN2Q92692 538 aa24.28■■□□□ 1.48
CHMP1A-207ENST00000549328 RIC1Q4ADV7 1423 aa24.27■■□□□ 1.48
CHMP1A-207ENST00000549328 ERFEQ4G0M1 354 aa24.27■■□□□ 1.48
CHMP1A-207ENST00000549328 PPP1R42Q7Z4L9 355 aa24.27■■□□□ 1.48
CHMP1A-207ENST00000549328 NUTM1Q86Y26 1132 aa24.27■■□□□ 1.48
CHMP1A-207ENST00000549328 TAOK3Q9H2K8 898 aa24.27■■□□□ 1.48
CHMP1A-207ENST00000549328 IFT57Q9NWB7 429 aa24.27■■□□□ 1.48
CHMP1A-207ENST00000549328 GNAI1P63096 354 aa24.26■■□□□ 1.47
CHMP1A-207ENST00000549328 CCDC184Q52MB2 194 aa24.26■■□□□ 1.47
CHMP1A-207ENST00000549328 HDGFL1Q5TGJ6 251 aa24.26■■□□□ 1.47
CHMP1A-207ENST00000549328 XAGE3Q8WTP9 111 aa24.26■■□□□ 1.47
CHMP1A-207ENST00000549328 MBIPQ9NS73 344 aa24.26■■□□□ 1.47
CHMP1A-207ENST00000549328 CCDC88AQ3V6T2 1871 aa24.26■■□□□ 1.47
CHMP1A-207ENST00000549328 GLTPD2A6NH11 291 aa24.25■■□□□ 1.47
CHMP1A-207ENST00000549328 NTSR2O95665 410 aa24.25■■□□□ 1.47
CHMP1A-207ENST00000549328 HSP90AB3PQ58FF7 597 aa24.25■■□□□ 1.47
CHMP1A-207ENST00000549328 ABCC12Q96J65 1359 aa24.25■■□□□ 1.47
CHMP1A-207ENST00000549328 HSPA6P17066 643 aa24.24■■□□□ 1.47
CHMP1A-207ENST00000549328 AIMP1Q12904 312 aaKnown RBP24.24■■□□□ 1.47
CHMP1A-207ENST00000549328 CCDC93Q567U6 631 aa24.24■■□□□ 1.47
CHMP1A-207ENST00000549328 DUSP27Q5VZP5 1158 aa24.24■■□□□ 1.47
CHMP1A-207ENST00000549328 CHPF2Q9P2E5 772 aa24.24■■□□□ 1.47
CHMP1A-207ENST00000549328 DBF4Q9UBU7 674 aaPredicted RBP24.24■■□□□ 1.47
CHMP1A-207ENST00000549328 ANP32CO43423 234 aa24.23■■□□□ 1.47
CHMP1A-207ENST00000549328 RRAGCQ9HB90 399 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms