RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PRDM10Q9NQV6 1147 aa22.73■■□□□ 1.23
VPS29-204ENST00000548259 CNTNAP1P78357 1384 aa22.73■■□□□ 1.23
VPS29-204ENST00000548259 UBR2Q8IWV8 1755 aa22.73■■□□□ 1.23
VPS29-204ENST00000548259 BTBD11A6QL63 1104 aa22.72■■□□□ 1.23
VPS29-204ENST00000548259 NPR1P16066 1061 aa22.72■■□□□ 1.23
VPS29-204ENST00000548259 TMEM88BA6NKF7 163 aa22.71■■□□□ 1.23
VPS29-204ENST00000548259 POTEIP0CG38 1075 aa22.71■■□□□ 1.23
VPS29-204ENST00000548259 POTEJP0CG39 1038 aa22.71■■□□□ 1.23
VPS29-204ENST00000548259 CTCFP49711 727 aaPredicted RBP22.71■■□□□ 1.23
VPS29-204ENST00000548259 TAF1DQ9H5J8 278 aaPredicted RBP22.71■■□□□ 1.23
VPS29-204ENST00000548259 SCN7AQ01118 1682 aa22.71■■□□□ 1.23
VPS29-204ENST00000548259 CLEC11AQ9Y240 323 aa22.7■■□□□ 1.22
VPS29-204ENST00000548259 CCDC88AQ3V6T2 1871 aa22.7■■□□□ 1.22
VPS29-204ENST00000548259 PASKQ96RG2 1323 aa22.69■■□□□ 1.22
VPS29-204ENST00000548259 FOXN1O15353 648 aa22.69■■□□□ 1.22
VPS29-204ENST00000548259 FKBP4Q02790 459 aaKnown RBP eCLIP22.69■■□□□ 1.22
VPS29-204ENST00000548259 EAPPQ56P03 285 aaPredicted RBP22.69■■□□□ 1.22
VPS29-204ENST00000548259 TPTE2Q6XPS3 522 aa22.69■■□□□ 1.22
VPS29-204ENST00000548259 PNMA8AQ86V59 439 aaPredicted RBP22.69■■□□□ 1.22
VPS29-204ENST00000548259 RTKN2Q8IZC4 609 aa22.69■■□□□ 1.22
VPS29-204ENST00000548259 HACL1Q9UJ83 578 aa22.69■■□□□ 1.22
VPS29-204ENST00000548259 FER1L6Q2WGJ9 1857 aa22.68■■□□□ 1.22
VPS29-204ENST00000548259 KIF7Q2M1P5 1343 aa22.68■■□□□ 1.22
VPS29-204ENST00000548259 ANKRD31Q8N7Z5 1873 aa22.67■■□□□ 1.22
VPS29-204ENST00000548259 DICER1Q9UPY3 1922 aaKnown RBP22.67■■□□□ 1.22
VPS29-204ENST00000548259 RGL2O15211 777 aa22.66■■□□□ 1.22
VPS29-204ENST00000548259 PER1O15534 1290 aaPredicted RBP22.66■■□□□ 1.22
VPS29-204ENST00000548259 SNRPA1P09661 255 aaKnown RBP22.66■■□□□ 1.22
VPS29-204ENST00000548259 C7orf43Q8WVR3 580 aa22.66■■□□□ 1.22
VPS29-204ENST00000548259 RTF1Q92541 710 aaKnown RBP22.66■■□□□ 1.22
VPS29-204ENST00000548259 CFAP53Q96M91 514 aa22.66■■□□□ 1.22
VPS29-204ENST00000548259 CEMIPQ8WUJ3 1361 aa22.65■■□□□ 1.22
VPS29-204ENST00000548259 GTF2E1P29083 439 aaPredicted RBP22.65■■□□□ 1.22
VPS29-204ENST00000548259 ALDH1B1P30837 517 aa22.65■■□□□ 1.22
VPS29-204ENST00000548259 COL11A2P13942 1736 aaPredicted RBP22.65■■□□□ 1.22
VPS29-204ENST00000548259 EPHX2P34913 555 aa22.64■■□□□ 1.21
VPS29-204ENST00000548259 VEGFBP49765 207 aa22.64■■□□□ 1.21
VPS29-204ENST00000548259 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.21
VPS29-204ENST00000548259 ZNF277Q9NRM2 450 aaPredicted RBP22.64■■□□□ 1.21
VPS29-204ENST00000548259 NIP7Q9Y221 180 aaKnown RBP eCLIP22.64■■□□□ 1.21
VPS29-204ENST00000548259 USP16Q9Y5T5 823 aa22.64■■□□□ 1.21
VPS29-204ENST00000548259 VIRMAQ69YN4 1812 aaKnown RBP22.64■■□□□ 1.21
VPS29-204ENST00000548259 NUDCQ9Y266 331 aa22.63■■□□□ 1.21
VPS29-204ENST00000548259 NPC1L1Q9UHC9 1359 aa22.63■■□□□ 1.21
VPS29-204ENST00000548259 KLRG2A4D1S0 409 aaPredicted RBP22.62■■□□□ 1.21
VPS29-204ENST00000548259 ITGBL1O95965 494 aaPredicted RBP22.62■■□□□ 1.21
VPS29-204ENST00000548259 JDP2Q8WYK2 163 aa22.62■■□□□ 1.21
VPS29-204ENST00000548259 SLX4Q8IY92 1834 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 KCNQ3O43525 872 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 PRKAR2BP31323 418 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 IARSP41252 1262 aaKnown RBP22.61■■□□□ 1.21
VPS29-204ENST00000548259 MAP2K1Q02750 393 aaPredicted RBP22.61■■□□□ 1.21
VPS29-204ENST00000548259 CNGB1Q14028 1251 aaPredicted RBP22.61■■□□□ 1.21
VPS29-204ENST00000548259 DEFB115Q30KQ5 88 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 CNTROBQ8N137 903 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 WBP1LQ9NX94 342 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 SCN4AP35499 1836 aa22.61■■□□□ 1.21
VPS29-204ENST00000548259 ZNF541Q9H0D2 1346 aa22.6■■□□□ 1.21
VPS29-204ENST00000548259 GPC2Q8N158 579 aa22.6■■□□□ 1.21
VPS29-204ENST00000548259 PIP4K2AP48426 406 aaPredicted RBP22.59■■□□□ 1.21
VPS29-204ENST00000548259 SYNE4Q8N205 404 aa22.59■■□□□ 1.21
VPS29-204ENST00000548259 ABT1Q9ULW3 272 aaKnown RBP22.59■■□□□ 1.21
VPS29-204ENST00000548259 COL3A1P02461 1466 aaPredicted RBP22.59■■□□□ 1.21
VPS29-204ENST00000548259 RASSF10A6NK89 507 aa22.58■■□□□ 1.21
VPS29-204ENST00000548259 FZD9O00144 591 aa22.58■■□□□ 1.21
VPS29-204ENST00000548259 LMOD1P29536 600 aaPredicted RBP22.58■■□□□ 1.21
VPS29-204ENST00000548259 LBX1P52954 281 aa22.58■■□□□ 1.21
VPS29-204ENST00000548259 EIF6P56537 245 aaKnown RBP22.58■■□□□ 1.21
VPS29-204ENST00000548259 CC2D2BQ6DHV5 1058 aa22.58■■□□□ 1.21
VPS29-204ENST00000548259 NYXQ9GZU5 481 aa22.58■■□□□ 1.21
VPS29-204ENST00000548259 RNF123Q5XPI4 1314 aa22.57■■□□□ 1.2
VPS29-204ENST00000548259 FAM177BA6PVY3 158 aa22.57■■□□□ 1.2
VPS29-204ENST00000548259 GRIPAP1Q4V328 841 aa22.57■■□□□ 1.2
VPS29-204ENST00000548259 PHACTR3Q96KR7 559 aa22.57■■□□□ 1.2
VPS29-204ENST00000548259 ARFGEF2Q9Y6D5 1785 aa22.56■■□□□ 1.2
VPS29-204ENST00000548259 MAP1SQ66K74 1059 aaPredicted RBP22.56■■□□□ 1.2
VPS29-204ENST00000548259 PSMD1Q99460 953 aa22.56■■□□□ 1.2
VPS29-204ENST00000548259 BEGAINQ9BUH8 593 aa22.56■■□□□ 1.2
VPS29-204ENST00000548259 RSPH6AQ9H0K4 717 aa22.56■■□□□ 1.2
VPS29-204ENST00000548259 BCORQ6W2J9 1755 aa22.55■■□□□ 1.2
VPS29-204ENST00000548259 WDR33Q9C0J8 1336 aaKnown RBP22.55■■□□□ 1.2
VPS29-204ENST00000548259 SIPA1L3O60292 1781 aaPredicted RBP22.54■■□□□ 1.2
VPS29-204ENST00000548259 HTATSF1O43719 755 aaKnown RBP22.54■■□□□ 1.2
VPS29-204ENST00000548259 PRAMEF22A3QJZ6 481 aa22.53■■□□□ 1.2
VPS29-204ENST00000548259 U2AF1L5P0DN76 240 aaPredicted RBP22.53■■□□□ 1.2
VPS29-204ENST00000548259 ECE1P42892 770 aa22.53■■□□□ 1.2
VPS29-204ENST00000548259 U2AF1Q01081 240 aaKnown RBP eCLIP22.53■■□□□ 1.2
VPS29-204ENST00000548259 OLFM4Q6UX06 510 aa22.53■■□□□ 1.2
VPS29-204ENST00000548259 MCM10Q7L590 875 aa22.53■■□□□ 1.2
VPS29-204ENST00000548259 RPGRQ92834 1020 aaKnown RBP22.53■■□□□ 1.2
VPS29-204ENST00000548259 TMX4Q9H1E5 349 aaPredicted RBP22.53■■□□□ 1.2
VPS29-204ENST00000548259 GJA3Q9Y6H8 435 aa22.53■■□□□ 1.2
VPS29-204ENST00000548259 DDX21Q9NR30 783 aaKnown RBP eCLIP22.52■■□□□ 1.2
VPS29-204ENST00000548259 NBPF26B4DH59 902 aa22.51■■□□□ 1.19
VPS29-204ENST00000548259 NEFMP07197 916 aa22.51■■□□□ 1.19
VPS29-204ENST00000548259 TAF7Q15545 349 aaPredicted RBP22.51■■□□□ 1.19
VPS29-204ENST00000548259 NBPF10Q6P3W6 841 aaKnown RBP22.51■■□□□ 1.19
VPS29-204ENST00000548259 PAXIP1Q6ZW49 1069 aaPredicted RBP22.51■■□□□ 1.19
VPS29-204ENST00000548259 NBPF15Q8N660 670 aa22.51■■□□□ 1.19
VPS29-204ENST00000548259 CACNA1SQ13698 1873 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms