RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	UBR3	Q6ZT12	1888 aa		10.48	□□□□□ -0.73
SNHG1-223	ENST00000545440	TNNT2	P45379	298 aa	Predicted RBP	10.47	□□□□□ -0.73
SNHG1-223	ENST00000545440	IL27	Q8NEV9	243 aa		10.47	□□□□□ -0.73
SNHG1-223	ENST00000545440	OTUD5	Q96G74	571 aa		10.47	□□□□□ -0.73
SNHG1-223	ENST00000545440	IGSF1	Q8N6C5	1336 aa		10.47	□□□□□ -0.73
SNHG1-223	ENST00000545440	NPC1L1	Q9UHC9	1359 aa		10.47	□□□□□ -0.73
SNHG1-223	ENST00000545440	COL5A3	P25940	1745 aa	Predicted RBP	10.47	□□□□□ -0.73
SNHG1-223	ENST00000545440	PPP1R3G	B7ZBB8	358 aa		10.46	□□□□□ -0.73
SNHG1-223	ENST00000545440	EIF4A2	Q14240	407 aa	Known RBP	10.46	□□□□□ -0.73
SNHG1-223	ENST00000545440	MORC1	Q86VD1	984 aa		10.46	□□□□□ -0.73
SNHG1-223	ENST00000545440	PACS2	Q86VP3	889 aa		10.46	□□□□□ -0.73
SNHG1-223	ENST00000545440	CDCA7L	Q96GN5	454 aa		10.46	□□□□□ -0.73
SNHG1-223	ENST00000545440	EYA1	Q99502	592 aa		10.46	□□□□□ -0.73
SNHG1-223	ENST00000545440	C4B	P0C0L5	1744 aa		10.46	□□□□□ -0.74
SNHG1-223	ENST00000545440	CIC	Q96RK0	1608 aa	Predicted RBP	10.45	□□□□□ -0.74
SNHG1-223	ENST00000545440	SLC27A3	Q5K4L6	730 aa		10.45	□□□□□ -0.74
SNHG1-223	ENST00000545440	SYTL4	Q96C24	671 aa	Predicted RBP	10.45	□□□□□ -0.74
SNHG1-223	ENST00000545440	STK32B	Q9NY57	414 aa		10.45	□□□□□ -0.74
SNHG1-223	ENST00000545440	ADAMTS7	Q9UKP4	1686 aa		10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	KDR	P35968	1356 aa		10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	CYP27B1	O15528	508 aa		10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	PER1	O15534	1290 aa	Predicted RBP	10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	SLC15A2	Q16348	729 aa		10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	GPCPD1	Q9NPB8	672 aa		10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	SPG7	Q9UQ90	795 aa		10.44	□□□□□ -0.74
SNHG1-223	ENST00000545440	COL3A1	P02461	1466 aa	Predicted RBP	10.43	□□□□□ -0.74
SNHG1-223	ENST00000545440	NBPF26	B4DH59	902 aa		10.43	□□□□□ -0.74
SNHG1-223	ENST00000545440	PARP9	Q8IXQ6	854 aa		10.43	□□□□□ -0.74
SNHG1-223	ENST00000545440	SPON1	Q9HCB6	807 aa		10.43	□□□□□ -0.74
SNHG1-223	ENST00000545440	KCNK17	Q96T54	332 aa		10.42	□□□□□ -0.74
SNHG1-223	ENST00000545440	LRRC4B	Q9NT99	713 aa		10.42	□□□□□ -0.74
SNHG1-223	ENST00000545440	CHD4	Q14839	1912 aa		10.42	□□□□□ -0.74
SNHG1-223	ENST00000545440	SIPA1L3	O60292	1781 aa	Predicted RBP	10.42	□□□□□ -0.74
SNHG1-223	ENST00000545440	PALLD	Q8WX93	1383 aa		10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	MDM2	Q00987	491 aa	Predicted RBP	10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	METTL3	Q86U44	580 aa	Known RBP	10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	ADGRG1	Q9Y653	693 aa		10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	UBR2	Q8IWV8	1755 aa		10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	C4A	P0C0L4	1744 aa		10.41	□□□□□ -0.74
SNHG1-223	ENST00000545440	PHKG2	P15735	406 aa		10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	HMGB2	P26583	209 aa	Known RBP	10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	SLC4A3	P48751	1232 aa		10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	EMP3	P54852	163 aa		10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	ZNF827	Q17R98	1081 aa		10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	IFNL2	Q8IZJ0	200 aa		10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	CCNL1	Q9UK58	526 aa	Predicted RBP	10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	TJP1	Q07157	1748 aa		10.4	□□□□□ -0.74
SNHG1-223	ENST00000545440	KDM6A	O15550	1401 aa	Predicted RBP	10.4	□□□□□ -0.75
SNHG1-223	ENST00000545440	MYH14	Q7Z406	1995 aa	Known RBP	10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	MRC1	P22897	1456 aa		10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	IL13	P35225	146 aa		10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	CC2D1B	Q5T0F9	858 aa	Known RBP	10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	MPRIP	Q6WCQ1	1025 aa		10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	MTFR1L	Q9H019	292 aa		10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	DLG5	Q8TDM6	1919 aa		10.39	□□□□□ -0.75
SNHG1-223	ENST00000545440	ZBTB7A	O95365	584 aa		10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	HSP90AB1	P08238	724 aa	Known RBP	10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	MTHFS	P49914	203 aa		10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	AMOT	Q4VCS5	1084 aa		10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	AEBP1	Q8IUX7	1158 aa		10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	PXYLP1	Q8TE99	480 aa		10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	SMARCC1	Q92922	1105 aa	Predicted RBP	10.38	□□□□□ -0.75
SNHG1-223	ENST00000545440	PNPLA7	Q6ZV29	1317 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	TRIM6-TRIM34	B2RNG4	842 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	COL9A1	P20849	921 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	VARS2	Q5ST30	1063 aa	Known RBP	10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	SULT6B1	Q6IMI4	303 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	TTC13	Q8NBP0	860 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	FAM117A	Q9C073	453 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	RSPH6A	Q9H0K4	717 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	TMOD3	Q9NYL9	352 aa		10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.37	□□□□□ -0.75
SNHG1-223	ENST00000545440	ARHGAP33	O14559	1287 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	SSTR3	P32745	418 aa	Predicted RBP	10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	PBX2	P40425	430 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	KCNQ4	P56696	695 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	FAM161A	Q3B820	660 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	SULF1	Q8IWU6	871 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	SLC16A10	Q8TF71	515 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	PIGB	Q92521	554 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	DCAF5	Q96JK2	942 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	PNMA3	Q9UL41	463 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	MAP3K5	Q99683	1374 aa		10.36	□□□□□ -0.75
SNHG1-223	ENST00000545440	KIF13B	Q9NQT8	1826 aa		10.35	□□□□□ -0.75
SNHG1-223	ENST00000545440	ERVV-2	B6SEH9	535 aa		10.35	□□□□□ -0.75
SNHG1-223	ENST00000545440	DIAPH1	O60610	1272 aa	Known RBP	10.35	□□□□□ -0.75
SNHG1-223	ENST00000545440	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.35	□□□□□ -0.75
SNHG1-223	ENST00000545440	TFCP2L1	Q9NZI6	479 aa		10.35	□□□□□ -0.75
SNHG1-223	ENST00000545440	DNAJB2	P25686	324 aa		10.34	□□□□□ -0.75
SNHG1-223	ENST00000545440	DIXDC1	Q155Q3	683 aa		10.34	□□□□□ -0.75
SNHG1-223	ENST00000545440	C1orf141	Q5JVX7	400 aa		10.34	□□□□□ -0.75
SNHG1-223	ENST00000545440	NUDT18	Q6ZVK8	323 aa		10.34	□□□□□ -0.75
SNHG1-223	ENST00000545440	LOC102724428	A0A0B4J2F2	783 aa		10.33	□□□□□ -0.76
SNHG1-223	ENST00000545440	ST18	O60284	1047 aa		10.33	□□□□□ -0.76
SNHG1-223	ENST00000545440	SIK1	P57059	783 aa		10.33	□□□□□ -0.76
SNHG1-223	ENST00000545440	TATDN2	Q93075	761 aa		10.33	□□□□□ -0.76

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