RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PARP4Q9UKK3 1724 aaKnown RBP9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 MFAP1P55081 439 aaKnown RBP9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 CHRNA2Q15822 529 aa9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 RNF25Q96BH1 459 aaPredicted RBP9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 PXDNLA1KZ92 1463 aa9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 KCNQ3O43525 872 aa9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 OFD1O75665 1012 aa9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.73□□□□□ -0.85
PDLIM5-221ENST00000542407 COL5A2P05997 1499 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 ZSCAN20P17040 1043 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 NUCB1Q02818 461 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 CCDC30Q5VVM6 783 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 ZSCAN30Q86W11 494 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 YY1AP1Q9H869 796 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 LETM1O95202 739 aaPredicted RBP9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 HOXB7P09629 217 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 LTBP4Q8N2S1 1624 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 GLI3P10071 1580 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 UQCRHLA0A096LP55 91 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 UQCRHP07919 91 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 C1orf141Q5JVX7 400 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 NBPF11Q86T75 865 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 NLRP2Q9NX02 1062 aa9.72□□□□□ -0.85
PDLIM5-221ENST00000542407 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.72□□□□□ -0.851e-6■■■■□ 20.7
PDLIM5-221ENST00000542407 SHANK3Q9BYB0 1731 aa9.71□□□□□ -0.85
PDLIM5-221ENST00000542407 GTPBP6O43824 516 aaPredicted RBP9.71□□□□□ -0.85
PDLIM5-221ENST00000542407 NASPP49321 788 aaPredicted RBP9.71□□□□□ -0.85
PDLIM5-221ENST00000542407 FLIIQ13045 1269 aa9.71□□□□□ -0.85
PDLIM5-221ENST00000542407 HSCBQ8IWL3 235 aa9.71□□□□□ -0.85
PDLIM5-221ENST00000542407 C5P01031 1676 aa9.71□□□□□ -0.86
PDLIM5-221ENST00000542407 BTBD11A6QL63 1104 aa9.71□□□□□ -0.86
PDLIM5-221ENST00000542407 F6X3S4 739 aa9.71□□□□□ -0.86
PDLIM5-221ENST00000542407 GTPBP4Q9BZE4 634 aaKnown RBP9.71□□□□□ -0.86
PDLIM5-221ENST00000542407 TTC36A6NLP5 189 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 PHKG2P15735 406 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 MEIS3Q99687 375 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 STK31Q9BXU1 1019 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 ISY1Q9ULR0 285 aaKnown RBP9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 ROBO1Q9Y6N7 1651 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 CCDC173Q0VFZ6 552 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 TEFQ10587 303 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 GCC1Q96CN9 775 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 C22orf23Q9BZE7 217 aa9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 AHDC1Q5TGY3 1603 aaPredicted RBP9.7□□□□□ -0.86
PDLIM5-221ENST00000542407 COL22A1Q8NFW1 1626 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 HSP90AB3PQ58FF7 597 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 HDGFL1Q5TGJ6 251 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 ANKRD44Q8N8A2 993 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 RAPGEF4Q8WZA2 1011 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 WDR17Q8IZU2 1322 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 TATP17735 454 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 CCT4P50991 539 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 CEP85Q6P2H3 762 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 CHD1LQ86WJ1 897 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 GPBP1L1Q9HC44 474 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 CYP27B1O15528 508 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 KCNV2Q8TDN2 545 aa9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 TNPO1Q92973 898 aaKnown RBP9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 ZNF219Q9P2Y4 722 aaPredicted RBP9.69□□□□□ -0.86
PDLIM5-221ENST00000542407 EP400NLQ6ZTU2 488 aa9.68□□□□□ -0.86
PDLIM5-221ENST00000542407 PHAXQ9H814 394 aaKnown RBP9.68□□□□□ -0.86
PDLIM5-221ENST00000542407 GIGYF1O75420 1035 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-221ENST00000542407 TMTC2Q8N394 836 aa9.68□□□□□ -0.86
PDLIM5-221ENST00000542407 SLC52A2Q9HAB3 445 aa9.68□□□□□ -0.86
PDLIM5-221ENST00000542407 SPG7Q9UQ90 795 aa9.68□□□□□ -0.86
PDLIM5-221ENST00000542407 COL16A1Q07092 1604 aaPredicted RBP9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 PAPPAQ13219 1627 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 CSB-PGBD3P0DP91 1061 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 BANK1Q8NDB2 785 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 GBP4Q96PP9 640 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 DCTPP1Q9H773 170 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 PRDM11Q9NQV5 511 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 CHPF2Q9P2E5 772 aa9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 IRX5P78411 483 aaPredicted RBP9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 FKBP5Q13451 457 aaPredicted RBP9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 RPAP2Q8IXW5 612 aaPredicted RBP9.67□□□□□ -0.86
PDLIM5-221ENST00000542407 PRAMEF22A3QJZ6 481 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 SLC4A10Q6U841 1118 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 IFNL2Q8IZJ0 200 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 FAM177A1Q8N128 213 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 ZC3H15Q8WU90 426 aaKnown RBP9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 LNPKQ9C0E8 428 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 ADCY9O60503 1353 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 HSP90AB1P08238 724 aaKnown RBP9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 MTERF4Q7Z6M4 381 aaKnown RBP9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 UBR2Q8IWV8 1755 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 APBB1O00213 710 aa9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 ZNF500O60304 480 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 ILDR1Q86SU0 546 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-221ENST00000542407 KDM4AO75164 1064 aa9.65□□□□□ -0.86
PDLIM5-221ENST00000542407 EIF2S2P20042 333 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-221ENST00000542407 DCAF5Q96JK2 942 aa9.65□□□□□ -0.86
PDLIM5-221ENST00000542407 COL14A1Q05707 1796 aaKnown RBP9.65□□□□□ -0.86
PDLIM5-221ENST00000542407 TOGARAM1Q9Y4F4 1720 aa9.65□□□□□ -0.86
PDLIM5-221ENST00000542407 LAMB4A4D0S4 1761 aa9.65□□□□□ -0.86
PDLIM5-221ENST00000542407 PROSER3Q2NL68 480 aa9.65□□□□□ -0.87
PDLIM5-221ENST00000542407 ANKRD45Q5TZF3 282 aa9.65□□□□□ -0.87
PDLIM5-221ENST00000542407 ZNF790Q6PG37 636 aa9.65□□□□□ -0.87
PDLIM5-221ENST00000542407 PLCH1Q4KWH8 1693 aa9.64□□□□□ -0.87
PDLIM5-221ENST00000542407 PDIA6Q15084 440 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms