RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 CARD10Q9BWT7 1032 aa8.67□□□□□ -1.02
CLTCL1-206ENST00000540896 WBP1LQ9NX94 342 aa8.67□□□□□ -1.02
CLTCL1-206ENST00000540896 TATP17735 454 aaPredicted RBP8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 PLCB2Q00722 1185 aa8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 KCNC4Q03721 635 aa8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 CCDC27Q2M243 656 aa8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 TSR1Q2NL82 804 aaKnown RBP8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 WDR63Q8IWG1 891 aa8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 GAS2L2Q8NHY3 880 aa8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 TSKSQ9UJT2 592 aa8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 THRAP3Q9Y2W1 955 aaKnown RBP8.66□□□□□ -1.02
CLTCL1-206ENST00000540896 GLI3P10071 1580 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 KDRP35968 1356 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 NBPF26B4DH59 902 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 MYT1Q01538 1121 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 CALD1Q05682 793 aaKnown RBP8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 MTHFSDQ2M296 383 aaKnown RBP8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 AMOTQ4VCS5 1084 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 BARGINQ6ZT62 677 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 HPS5Q9UPZ3 1129 aa8.65□□□□□ -1.02
CLTCL1-206ENST00000540896 RGPD2P0DJD1 1756 aa8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 PPP4CP60510 307 aa8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 C1orf141Q5JVX7 400 aa8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 SEPT12Q8IYM1 358 aa8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 RBM27Q9P2N5 1060 aaKnown RBP8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 SPG7Q9UQ90 795 aa8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 LAS1LQ9Y4W2 734 aaKnown RBP8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 FAM208AQ9UK61 1670 aaKnown RBP8.64□□□□□ -1.03
CLTCL1-206ENST00000540896 GNAT3A8MTJ3 354 aa8.63□□□□□ -1.03
CLTCL1-206ENST00000540896 E9PSI1 815 aa8.63□□□□□ -1.03
CLTCL1-206ENST00000540896 IL2RBP14784 551 aa8.63□□□□□ -1.03
CLTCL1-206ENST00000540896 ZNF530Q6P9A1 599 aaPredicted RBP8.63□□□□□ -1.03
CLTCL1-206ENST00000540896 CDCA7Q9BWT1 371 aaPredicted RBP8.63□□□□□ -1.03
CLTCL1-206ENST00000540896 MYH16Q9H6N6 1097 aa8.63□□□□□ -1.03
CLTCL1-206ENST00000540896 ZNF521Q96K83 1311 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 HTATSF1O43719 755 aaKnown RBP8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 OSBPP22059 807 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 SLFN5Q08AF3 891 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 DCTN1Q14203 1278 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 DDB1Q16531 1140 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 MCM10Q7L590 875 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 NECTIN2Q92692 538 aa8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 THUMPD2Q9BTF0 503 aaKnown RBP8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 IRX2Q9BZI1 471 aaPredicted RBP8.62□□□□□ -1.03
CLTCL1-206ENST00000540896 RGPD1P0DJD0 1748 aa8.61□□□□□ -1.03
CLTCL1-206ENST00000540896 EXOC5O00471 708 aa8.61□□□□□ -1.03
CLTCL1-206ENST00000540896 GNAI1P63096 354 aa8.61□□□□□ -1.03
CLTCL1-206ENST00000540896 TATDN2Q93075 761 aa8.61□□□□□ -1.03
CLTCL1-206ENST00000540896 RGS12O14924 1447 aa8.61□□□□□ -1.03
CLTCL1-206ENST00000540896 IL16Q14005 1332 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 AKAP4Q5JQC9 854 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 MPRIPQ6WCQ1 1025 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 KRT27Q7Z3Y8 459 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 IFNL2Q8IZJ0 200 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 ZCRB1Q8TBF4 217 aaKnown RBP8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 DISP2A7MBM2 1401 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 NCAPD2Q15021 1401 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 MAP3K5Q99683 1374 aa8.6□□□□□ -1.03
CLTCL1-206ENST00000540896 THSD7AQ9UPZ6 1657 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 WNK3Q9BYP7 1800 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 SLC4A3P48751 1232 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 TEFQ10587 303 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 DUSP27Q5VZP5 1158 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 DDX54Q8TDD1 881 aaKnown RBP8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 ARHGEF1Q92888 912 aaKnown RBP8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 TSR2Q969E8 191 aaKnown RBP8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 IFT57Q9NWB7 429 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 PNMA3Q9UL41 463 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 MEGF6O75095 1541 aa8.59□□□□□ -1.03
CLTCL1-206ENST00000540896 PARP4Q9UKK3 1724 aaKnown RBP8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 OVOS2A0A0G2JMS6 1433 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 HSP90AB1P08238 724 aaKnown RBP8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 TAF7Q15545 349 aaPredicted RBP8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 FAM182BQ5T319 152 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 SAMD7Q7Z3H4 446 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 TRMT2AQ8IZ69 625 aaKnown RBP8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 MARCH10Q8NA82 808 aaPredicted RBP8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 IL17REQ8NFR9 667 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 LGR6Q9HBX8 967 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 RCAN3Q9UKA8 241 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 SUPT16HQ9Y5B9 1047 aaKnown RBP8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 BRWD3Q6RI45 1802 aa8.58□□□□□ -1.04
CLTCL1-206ENST00000540896 PCDH11XQ9BZA7 1347 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 PCDH11YQ9BZA8 1340 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 RNMTO43148 476 aaKnown RBP8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 NEFLP07196 543 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 PHKG2P15735 406 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 DCAF5Q96JK2 942 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 MIS18AQ9NYP9 233 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 TSPYL4Q9UJ04 414 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 LRRC37A3O60309 1634 aa8.57□□□□□ -1.04
CLTCL1-206ENST00000540896 FANCIQ9NVI1 1328 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 SMAPO00193 183 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 CHL1O00533 1208 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 CYP27B1O15528 508 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 CABP4P57796 275 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 EXOSC9Q06265 439 aaKnown RBP8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 MBIPQ9NS73 344 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 PLEKHG2Q9H7P9 1386 aa8.56□□□□□ -1.04
CLTCL1-206ENST00000540896 TNS2Q63HR2 1409 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms