RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 AIDAQ96BJ3 306 aa15.74■□□□□ 0.11
CLSTN3-209ENST00000539982 COL11A2P13942 1736 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-209ENST00000539982 SLX4Q8IY92 1834 aa15.73■□□□□ 0.11
CLSTN3-209ENST00000539982 CAMTA2O94983 1202 aa15.73■□□□□ 0.11
CLSTN3-209ENST00000539982 ITGBL1O95965 494 aaPredicted RBP15.73■□□□□ 0.11
CLSTN3-209ENST00000539982 A1BGP04217 495 aa15.73■□□□□ 0.11
CLSTN3-209ENST00000539982 VEGFBP49765 207 aa15.73■□□□□ 0.11
CLSTN3-209ENST00000539982 C7orf43Q8WVR3 580 aa15.73■□□□□ 0.11
CLSTN3-209ENST00000539982 CLSPNQ9HAW4 1339 aa15.72■□□□□ 0.11
CLSTN3-209ENST00000539982 GNAT3A8MTJ3 354 aa15.72■□□□□ 0.11
CLSTN3-209ENST00000539982 FMNL2Q96PY5 1086 aa15.72■□□□□ 0.11
CLSTN3-209ENST00000539982 WBP1LQ9NX94 342 aa15.72■□□□□ 0.11
CLSTN3-209ENST00000539982 SCN4AP35499 1836 aa15.71■□□□□ 0.11
CLSTN3-209ENST00000539982 SCN7AQ01118 1682 aa15.71■□□□□ 0.11
CLSTN3-209ENST00000539982 CCDC93Q567U6 631 aa15.71■□□□□ 0.11
CLSTN3-209ENST00000539982 CLEC4GQ6UXB4 293 aa15.7■□□□□ 0.1
CLSTN3-209ENST00000539982 DZIP3Q86Y13 1208 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-209ENST00000539982 GAS2L2Q8NHY3 880 aa15.7■□□□□ 0.1
CLSTN3-209ENST00000539982 CLEC11AQ9Y240 323 aa15.7■□□□□ 0.1
CLSTN3-209ENST00000539982 NPR1P16066 1061 aa15.69■□□□□ 0.1
CLSTN3-209ENST00000539982 LBX1P52954 281 aa15.69■□□□□ 0.1
CLSTN3-209ENST00000539982 FKBP4Q02790 459 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLSTN3-209ENST00000539982 EAPPQ56P03 285 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-209ENST00000539982 NBPF5PQ86XG9 351 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-209ENST00000539982 HACL1Q9UJ83 578 aa15.69■□□□□ 0.1
CLSTN3-209ENST00000539982 KLRG2A4D1S0 409 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-209ENST00000539982 DEFB115Q30KQ5 88 aa15.68■□□□□ 0.1
CLSTN3-209ENST00000539982 PNMA8AQ86V59 439 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-209ENST00000539982 ZNF277Q9NRM2 450 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-209ENST00000539982 ZNF541Q9H0D2 1346 aa15.68■□□□□ 0.1
CLSTN3-209ENST00000539982 CACNA1SQ13698 1873 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 ARFGEF2Q9Y6D5 1785 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 RASSF10A6NK89 507 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 EPHX2P34913 555 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 TPTE2Q6XPS3 522 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 RTKN2Q8IZC4 609 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 CNTROBQ8N137 903 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 USP16Q9Y5T5 823 aa15.67■□□□□ 0.1
CLSTN3-209ENST00000539982 BTBD11A6QL63 1104 aa15.66■□□□□ 0.1
CLSTN3-209ENST00000539982 U2SURPO15042 1029 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-209ENST00000539982 PER1O15534 1290 aaPredicted RBP15.66■□□□□ 0.1
CLSTN3-209ENST00000539982 KCNQ3O43525 872 aa15.66■□□□□ 0.1
CLSTN3-209ENST00000539982 ZNF652Q9Y2D9 606 aa15.66■□□□□ 0.1
CLSTN3-209ENST00000539982 CEMIPQ8WUJ3 1361 aa15.65■□□□□ 0.1
CLSTN3-209ENST00000539982 SIPA1L3O60292 1781 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-209ENST00000539982 FZD9O00144 591 aa15.65■□□□□ 0.1
CLSTN3-209ENST00000539982 MAP2K1Q02750 393 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-209ENST00000539982 CC2D1BQ5T0F9 858 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-209ENST00000539982 PCGF6Q9BYE7 350 aa15.65■□□□□ 0.1
CLSTN3-209ENST00000539982 RGL2O15211 777 aa15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 HSPA8P11142 646 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 ALDH1B1P30837 517 aa15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 IARSP41252 1262 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 PIP4K2AP48426 406 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 MAP1SQ66K74 1059 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 OLFM4Q6UX06 510 aa15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 GPC2Q8N158 579 aa15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 SYNE4Q8N205 404 aa15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 ABHD8Q96I13 439 aa15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 WDR33Q9C0J8 1336 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-209ENST00000539982 BCORQ6W2J9 1755 aa15.63■□□□□ 0.09
CLSTN3-209ENST00000539982 ADAMTSL1Q8N6G6 1762 aa15.63■□□□□ 0.09
CLSTN3-209ENST00000539982 NIP7Q9Y221 180 aaKnown RBP eCLIP15.63■□□□□ 0.09
CLSTN3-209ENST00000539982 RNF123Q5XPI4 1314 aa15.63■□□□□ 0.09
CLSTN3-209ENST00000539982 PRAMEF22A3QJZ6 481 aa15.62■□□□□ 0.09
CLSTN3-209ENST00000539982 SLC34A2O95436 690 aa15.62■□□□□ 0.09
CLSTN3-209ENST00000539982 SNRPA1P09661 255 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-209ENST00000539982 PHACTR3Q96KR7 559 aa15.62■□□□□ 0.09
CLSTN3-209ENST00000539982 ABT1Q9ULW3 272 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-209ENST00000539982 KIF7Q2M1P5 1343 aa15.62■□□□□ 0.09
CLSTN3-209ENST00000539982 JDP2Q8WYK2 163 aa15.61■□□□□ 0.09
CLSTN3-209ENST00000539982 PSMD1Q99460 953 aa15.61■□□□□ 0.09
CLSTN3-209ENST00000539982 DDX21Q9NR30 783 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLSTN3-209ENST00000539982 COL3A1P02461 1466 aaPredicted RBP15.6■□□□□ 0.09
CLSTN3-209ENST00000539982 FAM177BA6PVY3 158 aa15.6■□□□□ 0.09
CLSTN3-209ENST00000539982 NBPF26B4DH59 902 aa15.6■□□□□ 0.09
CLSTN3-209ENST00000539982 NBPF10Q6P3W6 841 aaKnown RBP15.6■□□□□ 0.09
CLSTN3-209ENST00000539982 NBPF15Q8N660 670 aa15.6■□□□□ 0.09
CLSTN3-209ENST00000539982 GTF2E1P29083 439 aaPredicted RBP15.59■□□□□ 0.09
CLSTN3-209ENST00000539982 FAM161AQ3B820 660 aa15.59■□□□□ 0.09
CLSTN3-209ENST00000539982 PRKAR2BP31323 418 aa15.58■□□□□ 0.08
CLSTN3-209ENST00000539982 ECE1P42892 770 aa15.58■□□□□ 0.08
CLSTN3-209ENST00000539982 EIF6P56537 245 aaKnown RBP15.58■□□□□ 0.08
CLSTN3-209ENST00000539982 CC2D2BQ6DHV5 1058 aa15.58■□□□□ 0.08
CLSTN3-209ENST00000539982 GJA3Q9Y6H8 435 aa15.58■□□□□ 0.08
CLSTN3-209ENST00000539982 LMOD1P29536 600 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-209ENST00000539982 HLFQ16534 295 aa15.57■□□□□ 0.08
CLSTN3-209ENST00000539982 CRY2Q49AN0 593 aa15.57■□□□□ 0.08
CLSTN3-209ENST00000539982 CAPNS2Q96L46 248 aa15.57■□□□□ 0.08
CLSTN3-209ENST00000539982 BEGAINQ9BUH8 593 aa15.57■□□□□ 0.08
CLSTN3-209ENST00000539982 GRIPAP1Q4V328 841 aa15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 RTF1Q92541 710 aaKnown RBP15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 GPR101Q96P66 508 aaPredicted RBP15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 NYXQ9GZU5 481 aa15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 RSPH6AQ9H0K4 717 aa15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 NPC1L1Q9UHC9 1359 aa15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 SNED1Q8TER0 1413 aa15.56■□□□□ 0.08
CLSTN3-209ENST00000539982 CCDC85CA6NKD9 419 aa15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 EPS15P42566 896 aa15.55■□□□□ 0.08
CLSTN3-209ENST00000539982 RGS19P49795 217 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 191.4 ms