RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 DLEC1Q9Y238 1755 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 NPHP1O15259 732 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 KIF6Q6ZMV9 814 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 ARHGAP27Q6ZUM4 889 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 C2CD5Q86YS7 1000 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 TTLL6Q8N841 843 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 MAP3K15Q6ZN16 1313 aa15.11■□□□□ 0.01
RTN3-209ENST00000538995 HOXB7P09629 217 aa15.1■□□□□ 0.01
RTN3-209ENST00000538995 CALD1Q05682 793 aaKnown RBP15.1■□□□□ 0.01
RTN3-209ENST00000538995 NBPF5PQ86XG9 351 aaPredicted RBP15.1■□□□□ 0.01
RTN3-209ENST00000538995 NIP7Q9Y221 180 aaKnown RBP eCLIP15.1■□□□□ 0.01
RTN3-209ENST00000538995 ANP32CO43423 234 aa15.09■□□□□ 0.01
RTN3-209ENST00000538995 CFAP44Q96MT7 982 aa15.09■□□□□ 0.01
RTN3-209ENST00000538995 IBTKQ9P2D0 1353 aaPredicted RBP15.09■□□□□ 0.01
RTN3-209ENST00000538995 APAF1O14727 1248 aa15.08■□□□□ 0
RTN3-209ENST00000538995 MYL6BP14649 208 aa15.08■□□□□ 0
RTN3-209ENST00000538995 HLFQ16534 295 aa15.08■□□□□ 0
RTN3-209ENST00000538995 TPTE2Q6XPS3 522 aa15.08■□□□□ 0
RTN3-209ENST00000538995 LRP10Q7Z4F1 713 aa15.08■□□□□ 0
RTN3-209ENST00000538995 ANKRD31Q8N7Z5 1873 aa15.08■□□□□ 0
RTN3-209ENST00000538995 EIF2S2P20042 333 aaKnown RBP15.07■□□□□ 0
RTN3-209ENST00000538995 PDIA6Q15084 440 aa15.07■□□□□ 0
RTN3-209ENST00000538995 STYK1Q6J9G0 422 aa15.07■□□□□ 0
RTN3-209ENST00000538995 TTLL7Q6ZT98 887 aa15.07■□□□□ 0
RTN3-209ENST00000538995 NGEFQ8N5V2 710 aa15.07■□□□□ 0
RTN3-209ENST00000538995 GPBP1L1Q9HC44 474 aaPredicted RBP15.07■□□□□ 0
RTN3-209ENST00000538995 IFT57Q9NWB7 429 aa15.07■□□□□ 0
RTN3-209ENST00000538995 KLRG2A4D1S0 409 aaPredicted RBP15.06■□□□□ 0
RTN3-209ENST00000538995 ZNF853P0CG23 659 aa15.06■□□□□ 0
RTN3-209ENST00000538995 SRGNP10124 158 aa15.06■□□□□ 0
RTN3-209ENST00000538995 CNKSR1Q969H4 720 aa15.06■□□□□ 0
RTN3-209ENST00000538995 NYXQ9GZU5 481 aa15.06■□□□□ 0
RTN3-209ENST00000538995 LAS1LQ9Y4W2 734 aaKnown RBP15.06■□□□□ 0
RTN3-209ENST00000538995 COL11A2P13942 1736 aaPredicted RBP15.06■□□□□ 0
RTN3-209ENST00000538995 GNAI1P63096 354 aa15.05■□□□□ -0
RTN3-209ENST00000538995 CCDC184Q52MB2 194 aa15.05■□□□□ -0
RTN3-209ENST00000538995 C9orf131Q5VYM1 1079 aa15.05■□□□□ -0
RTN3-209ENST00000538995 GIGYF2Q6Y7W6 1299 aaKnown RBP15.05■□□□□ -0
RTN3-209ENST00000538995 CCDC24Q8N4L8 307 aa15.05■□□□□ -0
RTN3-209ENST00000538995 ZNF622Q969S3 477 aaKnown RBP eCLIP15.05■□□□□ -0
RTN3-209ENST00000538995 MASTLQ96GX5 879 aa15.05■□□□□ -0
RTN3-209ENST00000538995 ZC3H4Q9UPT8 1303 aaKnown RBP15.05■□□□□ -0
RTN3-209ENST00000538995 RIC1Q4ADV7 1423 aa15.05■□□□□ -0
RTN3-209ENST00000538995 C1QTNF8P60827 252 aa15.04■□□□□ -0
RTN3-209ENST00000538995 PROSER3Q2NL68 480 aa15.04■□□□□ -0
RTN3-209ENST00000538995 NCBP3Q53F19 620 aaKnown RBP15.04■□□□□ -0
RTN3-209ENST00000538995 ZBTB3Q9H5J0 574 aa15.04■□□□□ -0
RTN3-209ENST00000538995 MRS2Q9HD23 443 aa15.04■□□□□ -0
RTN3-209ENST00000538995 DDX21Q9NR30 783 aaKnown RBP eCLIP15.04■□□□□ -0
RTN3-209ENST00000538995 MBIPQ9NS73 344 aa15.04■□□□□ -0
RTN3-209ENST00000538995 UBN2Q6ZU65 1347 aa15.03■□□□□ -0
RTN3-209ENST00000538995 NPR1P16066 1061 aa15.03■□□□□ -0
RTN3-209ENST00000538995 CCDC27Q2M243 656 aa15.03■□□□□ -0
RTN3-209ENST00000538995 KRT24Q2M2I5 525 aa15.03■□□□□ -0
RTN3-209ENST00000538995 PARP10Q53GL7 1025 aa15.03■□□□□ -0
RTN3-209ENST00000538995 SOGA3Q5TF21 947 aa15.03■□□□□ -0
RTN3-209ENST00000538995 HDGFL1Q5TGJ6 251 aa15.03■□□□□ -0
RTN3-209ENST00000538995 ZNF34Q8IZ26 560 aa15.03■□□□□ -0
RTN3-209ENST00000538995 RNF181Q9P0P0 153 aa15.03■□□□□ -0
RTN3-209ENST00000538995 RNF123Q5XPI4 1314 aa15.02■□□□□ -0
RTN3-209ENST00000538995 LMNB1P20700 586 aa15.02■□□□□ -0
RTN3-209ENST00000538995 GTF2E1P29083 439 aaPredicted RBP15.02■□□□□ -0
RTN3-209ENST00000538995 HSP90AB3PQ58FF7 597 aa15.02■□□□□ -0
RTN3-209ENST00000538995 DUSP27Q5VZP5 1158 aa15.02■□□□□ -0
RTN3-209ENST00000538995 PRPF40BQ6NWY9 871 aaKnown RBP15.02■□□□□ -0
RTN3-209ENST00000538995 ABCC12Q96J65 1359 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 LTBP3Q9NS15 1303 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 NFKBIEO00221 500 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 ANXA1P04083 346 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 RASSF7Q02833 373 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 CRY2Q49AN0 593 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 COPS6Q7L5N1 327 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 ZNF526Q8TF50 670 aaPredicted RBP15.01□□□□□ -0.01
RTN3-209ENST00000538995 XAGE3Q8WTP9 111 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 CHMP4AQ9BY43 222 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 CHPF2Q9P2E5 772 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 DBF4Q9UBU7 674 aaPredicted RBP15.01□□□□□ -0.01
RTN3-209ENST00000538995 NUP98P52948 1817 aa15.01□□□□□ -0.01
RTN3-209ENST00000538995 FAM177BA6PVY3 158 aa15□□□□□ -0.01
RTN3-209ENST00000538995 C21orf2O43822 256 aa15□□□□□ -0.01
RTN3-209ENST00000538995 NTSR2O95665 410 aa15□□□□□ -0.01
RTN3-209ENST00000538995 GPTP24298 496 aa15□□□□□ -0.01
RTN3-209ENST00000538995 PPP1R42Q7Z4L9 355 aa15□□□□□ -0.01
RTN3-209ENST00000538995 NECTIN2Q92692 538 aa15□□□□□ -0.01
RTN3-209ENST00000538995 ARFGEF2Q9Y6D5 1785 aa15□□□□□ -0.01
RTN3-209ENST00000538995 SUSD4Q5VX71 490 aa14.99□□□□□ -0.01
RTN3-209ENST00000538995 NUTM1Q86Y26 1132 aa14.99□□□□□ -0.01
RTN3-209ENST00000538995 HYPKQ9NX55 129 aa14.99□□□□□ -0.01
RTN3-209ENST00000538995 IL16Q14005 1332 aa14.98□□□□□ -0.01
RTN3-209ENST00000538995 KDM2BQ8NHM5 1336 aa14.98□□□□□ -0.01
RTN3-209ENST00000538995 ALDH1B1P30837 517 aa14.98□□□□□ -0.01
RTN3-209ENST00000538995 AIMP1Q12904 312 aaKnown RBP14.98□□□□□ -0.01
RTN3-209ENST00000538995 ERFEQ4G0M1 354 aa14.98□□□□□ -0.01
RTN3-209ENST00000538995 C7orf43Q8WVR3 580 aa14.98□□□□□ -0.01
RTN3-209ENST00000538995 TAOK3Q9H2K8 898 aa14.98□□□□□ -0.01
RTN3-209ENST00000538995 TNRC6CQ9HCJ0 1690 aaKnown RBP14.97□□□□□ -0.01
RTN3-209ENST00000538995 KIF3CO14782 793 aa14.97□□□□□ -0.01
RTN3-209ENST00000538995 TCIRG1Q13488 830 aa14.97□□□□□ -0.01
RTN3-209ENST00000538995 CCDC93Q567U6 631 aa14.97□□□□□ -0.01
RTN3-209ENST00000538995 WWC1Q8IX03 1113 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms