RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 ZNF219Q9P2Y4 722 aaPredicted RBP16.84■□□□□ 0.29
CAPN1-223ENST00000533079 THSD7BQ9C0I4 1608 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 CCDC93Q567U6 631 aa16.83■□□□□ 0.28
CAPN1-223ENST00000533079 ZNF790Q6PG37 636 aa16.83■□□□□ 0.28
CAPN1-223ENST00000533079 TAF1DQ9H5J8 278 aaPredicted RBP16.83■□□□□ 0.28
CAPN1-223ENST00000533079 HSPA5P11021 654 aaKnown RBP16.82■□□□□ 0.28
CAPN1-223ENST00000533079 TEFQ10587 303 aa16.82■□□□□ 0.28
CAPN1-223ENST00000533079 AMER1Q5JTC6 1135 aaPredicted RBP16.82■□□□□ 0.28
CAPN1-223ENST00000533079 ZNF496Q96IT1 587 aaPredicted RBP16.82■□□□□ 0.28
CAPN1-223ENST00000533079 DIAPH1O60610 1272 aaKnown RBP16.81■□□□□ 0.28
CAPN1-223ENST00000533079 CAMTA2O94983 1202 aa16.81■□□□□ 0.28
CAPN1-223ENST00000533079 FMNL2Q96PY5 1086 aa16.81■□□□□ 0.28
CAPN1-223ENST00000533079 TBC1D2BQ9UPU7 963 aa16.81■□□□□ 0.28
CAPN1-223ENST00000533079 ZNF330Q9Y3S2 320 aaPredicted RBP16.81■□□□□ 0.28
CAPN1-223ENST00000533079 RASSF10A6NK89 507 aa16.8■□□□□ 0.28
CAPN1-223ENST00000533079 SLC34A2O95436 690 aa16.8■□□□□ 0.28
CAPN1-223ENST00000533079 VEGFBP49765 207 aa16.8■□□□□ 0.28
CAPN1-223ENST00000533079 FKBP4Q02790 459 aaKnown RBP eCLIP16.8■□□□□ 0.28
CAPN1-223ENST00000533079 PNMA8AQ86V59 439 aaPredicted RBP16.8■□□□□ 0.28
CAPN1-223ENST00000533079 GAS2L2Q8NHY3 880 aa16.8■□□□□ 0.28
CAPN1-223ENST00000533079 WBP1LQ9NX94 342 aa16.8■□□□□ 0.28
CAPN1-223ENST00000533079 HACL1Q9UJ83 578 aa16.8■□□□□ 0.28
CAPN1-223ENST00000533079 GNAT3A8MTJ3 354 aa16.79■□□□□ 0.28
CAPN1-223ENST00000533079 RGL2O15211 777 aa16.79■□□□□ 0.28
CAPN1-223ENST00000533079 ITGBL1O95965 494 aaPredicted RBP16.79■□□□□ 0.28
CAPN1-223ENST00000533079 CLEC4GQ6UXB4 293 aa16.79■□□□□ 0.28
CAPN1-223ENST00000533079 CCDC24Q8N4L8 307 aa16.79■□□□□ 0.28
CAPN1-223ENST00000533079 ZNF652Q9Y2D9 606 aa16.79■□□□□ 0.28
CAPN1-223ENST00000533079 COL3A1P02461 1466 aaPredicted RBP16.79■□□□□ 0.28
CAPN1-223ENST00000533079 CEMIPQ8WUJ3 1361 aa16.78■□□□□ 0.28
CAPN1-223ENST00000533079 NPR1P16066 1061 aa16.78■□□□□ 0.28
CAPN1-223ENST00000533079 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
CAPN1-223ENST00000533079 MAP2K1Q02750 393 aaPredicted RBP16.78■□□□□ 0.28
CAPN1-223ENST00000533079 DZIP3Q86Y13 1208 aaKnown RBP16.78■□□□□ 0.28
CAPN1-223ENST00000533079 C7orf43Q8WVR3 580 aa16.78■□□□□ 0.28
CAPN1-223ENST00000533079 KLRG2A4D1S0 409 aaPredicted RBP16.77■□□□□ 0.28
CAPN1-223ENST00000533079 EPHX2P34913 555 aa16.77■□□□□ 0.28
CAPN1-223ENST00000533079 EAPPQ56P03 285 aaPredicted RBP16.77■□□□□ 0.28
CAPN1-223ENST00000533079 RTKN2Q8IZC4 609 aa16.77■□□□□ 0.28
CAPN1-223ENST00000533079 ZNF541Q9H0D2 1346 aa16.76■□□□□ 0.27
CAPN1-223ENST00000533079 LBX1P52954 281 aa16.76■□□□□ 0.27
CAPN1-223ENST00000533079 NBPF5PQ86XG9 351 aaPredicted RBP16.76■□□□□ 0.27
CAPN1-223ENST00000533079 A1BGP04217 495 aa16.75■□□□□ 0.27
CAPN1-223ENST00000533079 IL17REQ8NFR9 667 aa16.75■□□□□ 0.27
CAPN1-223ENST00000533079 HSPA8P11142 646 aaKnown RBP16.74■□□□□ 0.27
CAPN1-223ENST00000533079 DEFB115Q30KQ5 88 aa16.74■□□□□ 0.27
CAPN1-223ENST00000533079 GPC2Q8N158 579 aa16.74■□□□□ 0.27
CAPN1-223ENST00000533079 CLEC11AQ9Y240 323 aa16.74■□□□□ 0.27
CAPN1-223ENST00000533079 RNF123Q5XPI4 1314 aa16.73■□□□□ 0.27
CAPN1-223ENST00000533079 SNED1Q8TER0 1413 aa16.73■□□□□ 0.27
CAPN1-223ENST00000533079 FZD9O00144 591 aa16.73■□□□□ 0.27
CAPN1-223ENST00000533079 IARSP41252 1262 aaKnown RBP16.73■□□□□ 0.27
CAPN1-223ENST00000533079 CNTROBQ8N137 903 aa16.73■□□□□ 0.27
CAPN1-223ENST00000533079 ABHD8Q96I13 439 aa16.73■□□□□ 0.27
CAPN1-223ENST00000533079 ZNF277Q9NRM2 450 aaPredicted RBP16.73■□□□□ 0.27
CAPN1-223ENST00000533079 WDR33Q9C0J8 1336 aaKnown RBP16.72■□□□□ 0.27
CAPN1-223ENST00000533079 BTBD11A6QL63 1104 aa16.72■□□□□ 0.27
CAPN1-223ENST00000533079 ALDH1B1P30837 517 aa16.72■□□□□ 0.27
CAPN1-223ENST00000533079 TPTE2Q6XPS3 522 aa16.72■□□□□ 0.27
CAPN1-223ENST00000533079 PSMD1Q99460 953 aa16.72■□□□□ 0.27
CAPN1-223ENST00000533079 LAMB4A4D0S4 1761 aa16.72■□□□□ 0.27
CAPN1-223ENST00000533079 NPC1L1Q9UHC9 1359 aa16.71■□□□□ 0.27
CAPN1-223ENST00000533079 RIC1Q4ADV7 1423 aa16.7■□□□□ 0.26
CAPN1-223ENST00000533079 ECE1P42892 770 aa16.7■□□□□ 0.26
CAPN1-223ENST00000533079 FAM161AQ3B820 660 aa16.7■□□□□ 0.26
CAPN1-223ENST00000533079 JDP2Q8WYK2 163 aa16.7■□□□□ 0.26
CAPN1-223ENST00000533079 ABT1Q9ULW3 272 aaKnown RBP16.7■□□□□ 0.26
CAPN1-223ENST00000533079 U2SURPO15042 1029 aaKnown RBP16.69■□□□□ 0.26
CAPN1-223ENST00000533079 SNRPA1P09661 255 aaKnown RBP16.69■□□□□ 0.26
CAPN1-223ENST00000533079 GRIPAP1Q4V328 841 aa16.69■□□□□ 0.26
CAPN1-223ENST00000533079 MAP1SQ66K74 1059 aaPredicted RBP16.69■□□□□ 0.26
CAPN1-223ENST00000533079 CC2D2BQ6DHV5 1058 aa16.69■□□□□ 0.26
CAPN1-223ENST00000533079 DDX21Q9NR30 783 aaKnown RBP eCLIP16.69■□□□□ 0.26
CAPN1-223ENST00000533079 NIP7Q9Y221 180 aaKnown RBP eCLIP16.69■□□□□ 0.26
CAPN1-223ENST00000533079 LTBP1Q14766 1721 aa16.68■□□□□ 0.26
CAPN1-223ENST00000533079 LMOD1P29536 600 aaPredicted RBP16.68■□□□□ 0.26
CAPN1-223ENST00000533079 EIF6P56537 245 aaKnown RBP16.68■□□□□ 0.26
CAPN1-223ENST00000533079 BEGAINQ9BUH8 593 aa16.68■□□□□ 0.26
CAPN1-223ENST00000533079 USP16Q9Y5T5 823 aa16.68■□□□□ 0.26
CAPN1-223ENST00000533079 KIF7Q2M1P5 1343 aa16.68■□□□□ 0.26
CAPN1-223ENST00000533079 PER1O15534 1290 aaPredicted RBP16.67■□□□□ 0.26
CAPN1-223ENST00000533079 CRY2Q49AN0 593 aa16.67■□□□□ 0.26
CAPN1-223ENST00000533079 SYNE4Q8N205 404 aa16.67■□□□□ 0.26
CAPN1-223ENST00000533079 IBTKQ9P2D0 1353 aaPredicted RBP16.66■□□□□ 0.26
CAPN1-223ENST00000533079 NYXQ9GZU5 481 aa16.66■□□□□ 0.26
CAPN1-223ENST00000533079 TRPM7Q96QT4 1865 aa16.65■□□□□ 0.26
CAPN1-223ENST00000533079 RGS19P49795 217 aa16.65■□□□□ 0.26
CAPN1-223ENST00000533079 MLLT1Q03111 559 aaPredicted RBP16.65■□□□□ 0.26
CAPN1-223ENST00000533079 CC2D1BQ5T0F9 858 aaKnown RBP16.65■□□□□ 0.26
CAPN1-223ENST00000533079 USP50Q70EL3 339 aaPredicted RBP16.65■□□□□ 0.26
CAPN1-223ENST00000533079 CAPNS2Q96L46 248 aa16.65■□□□□ 0.26
CAPN1-223ENST00000533079 COL4A5P29400 1685 aa16.65■□□□□ 0.26
CAPN1-223ENST00000533079 KCNQ3O43525 872 aa16.64■□□□□ 0.25
CAPN1-223ENST00000533079 CA12O43570 354 aa16.64■□□□□ 0.25
CAPN1-223ENST00000533079 GTF2E1P29083 439 aaPredicted RBP16.64■□□□□ 0.25
CAPN1-223ENST00000533079 PIP4K2AP48426 406 aaPredicted RBP16.64■□□□□ 0.25
CAPN1-223ENST00000533079 OLFM4Q6UX06 510 aa16.64■□□□□ 0.25
CAPN1-223ENST00000533079 SCNN1DP51172 638 aa16.63■□□□□ 0.25
CAPN1-223ENST00000533079 RTF1Q92541 710 aaKnown RBP16.63■□□□□ 0.25
CAPN1-223ENST00000533079 GPR101Q96P66 508 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms