RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 TIAM2Q8IVF5 1701 aa22.26■■□□□ 1.15
CPSF1-207ENST00000531727 RGL2O15211 777 aa22.26■■□□□ 1.15
CPSF1-207ENST00000531727 PRELPP51888 382 aa22.26■■□□□ 1.15
CPSF1-207ENST00000531727 RALBP1Q15311 655 aa22.26■■□□□ 1.15
CPSF1-207ENST00000531727 CCDC88AQ3V6T2 1871 aa22.26■■□□□ 1.15
CPSF1-207ENST00000531727 NFKBIEO00221 500 aa22.25■■□□□ 1.15
CPSF1-207ENST00000531727 ARFGEF2Q9Y6D5 1785 aa22.25■■□□□ 1.15
CPSF1-207ENST00000531727 CACNA1SQ13698 1873 aa22.24■■□□□ 1.15
CPSF1-207ENST00000531727 NBPF5PQ86XG9 351 aaPredicted RBP22.24■■□□□ 1.15
CPSF1-207ENST00000531727 C16orf71Q8IYS4 520 aaPredicted RBP22.24■■□□□ 1.15
CPSF1-207ENST00000531727 THUMPD2Q9BTF0 503 aaKnown RBP22.24■■□□□ 1.15
CPSF1-207ENST00000531727 FER1L6Q2WGJ9 1857 aa22.24■■□□□ 1.15
CPSF1-207ENST00000531727 C21orf2O43822 256 aa22.23■■□□□ 1.15
CPSF1-207ENST00000531727 SRGNP10124 158 aa22.23■■□□□ 1.15
CPSF1-207ENST00000531727 STYK1Q6J9G0 422 aa22.23■■□□□ 1.15
CPSF1-207ENST00000531727 RBM46Q8TBY0 533 aaKnown RBP22.23■■□□□ 1.15
CPSF1-207ENST00000531727 EIF4A1P60842 406 aaKnown RBP22.22■■□□□ 1.15
CPSF1-207ENST00000531727 CNKSR1Q969H4 720 aa22.22■■□□□ 1.15
CPSF1-207ENST00000531727 RRAGCQ9HB90 399 aa22.22■■□□□ 1.15
CPSF1-207ENST00000531727 SLX4Q8IY92 1834 aa22.22■■□□□ 1.15
CPSF1-207ENST00000531727 MASTLQ96GX5 879 aa22.21■■□□□ 1.15
CPSF1-207ENST00000531727 ZNF219Q9P2Y4 722 aaPredicted RBP22.21■■□□□ 1.15
CPSF1-207ENST00000531727 NIP7Q9Y221 180 aaKnown RBP eCLIP22.21■■□□□ 1.15
CPSF1-207ENST00000531727 APLP1P51693 650 aa22.2■■□□□ 1.14
CPSF1-207ENST00000531727 GLTPD2A6NH11 291 aa22.19■■□□□ 1.14
CPSF1-207ENST00000531727 DDX10Q13206 875 aaKnown RBP22.19■■□□□ 1.14
CPSF1-207ENST00000531727 HLFQ16534 295 aa22.19■■□□□ 1.14
CPSF1-207ENST00000531727 PRPF40BQ6NWY9 871 aaKnown RBP22.19■■□□□ 1.14
CPSF1-207ENST00000531727 TPTE2Q6XPS3 522 aa22.19■■□□□ 1.14
CPSF1-207ENST00000531727 DICER1Q9UPY3 1922 aaKnown RBP22.19■■□□□ 1.14
CPSF1-207ENST00000531727 LTBP3Q9NS15 1303 aa22.18■■□□□ 1.14
CPSF1-207ENST00000531727 MYBBP1AQ9BQG0 1328 aaKnown RBP22.17■■□□□ 1.14
CPSF1-207ENST00000531727 FSTL1Q12841 308 aa22.17■■□□□ 1.14
CPSF1-207ENST00000531727 SOGA3Q5TF21 947 aa22.17■■□□□ 1.14
CPSF1-207ENST00000531727 NGEFQ8N5V2 710 aa22.17■■□□□ 1.14
CPSF1-207ENST00000531727 NUP98P52948 1817 aa22.17■■□□□ 1.14
CPSF1-207ENST00000531727 KLRG2A4D1S0 409 aaPredicted RBP22.16■■□□□ 1.14
CPSF1-207ENST00000531727 ERVV-1B6SEH8 477 aa22.16■■□□□ 1.14
CPSF1-207ENST00000531727 RIPK4P57078 832 aa22.16■■□□□ 1.14
CPSF1-207ENST00000531727 RRP7AQ9Y3A4 280 aaKnown RBP22.16■■□□□ 1.14
CPSF1-207ENST00000531727 WDR90Q96KV7 1748 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 MAP3K15Q6ZN16 1313 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 FAM177BA6PVY3 158 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 MYL6BP14649 208 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 NPR1P16066 1061 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 TAOK3Q9H2K8 898 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 TSPYL4Q9UJ04 414 aa22.15■■□□□ 1.14
CPSF1-207ENST00000531727 TMPOP42166 694 aaKnown RBP22.14■■□□□ 1.13
CPSF1-207ENST00000531727 ERFEQ4G0M1 354 aa22.14■■□□□ 1.13
CPSF1-207ENST00000531727 KIF6Q6ZMV9 814 aa22.14■■□□□ 1.13
CPSF1-207ENST00000531727 ERBB4Q15303 1308 aa22.13■■□□□ 1.13
CPSF1-207ENST00000531727 VEGFAP15692 232 aaPredicted RBP22.13■■□□□ 1.13
CPSF1-207ENST00000531727 LMOD3Q0VAK6 560 aa22.13■■□□□ 1.13
CPSF1-207ENST00000531727 TTLL7Q6ZT98 887 aa22.13■■□□□ 1.13
CPSF1-207ENST00000531727 BABAM1Q9NWV8 329 aa22.13■■□□□ 1.13
CPSF1-207ENST00000531727 GTF2E1P29083 439 aaPredicted RBP22.12■■□□□ 1.13
CPSF1-207ENST00000531727 DPY19L2Q6NUT2 758 aa22.12■■□□□ 1.13
CPSF1-207ENST00000531727 C7orf43Q8WVR3 580 aa22.12■■□□□ 1.13
CPSF1-207ENST00000531727 NYXQ9GZU5 481 aa22.12■■□□□ 1.13
CPSF1-207ENST00000531727 SMC1BQ8NDV3 1235 aa22.11■■□□□ 1.13
CPSF1-207ENST00000531727 CCDC93Q567U6 631 aa22.1■■□□□ 1.13
CPSF1-207ENST00000531727 DNAJC5GQ8N7S2 189 aa22.1■■□□□ 1.13
CPSF1-207ENST00000531727 ZBTB3Q9H5J0 574 aa22.1■■□□□ 1.13
CPSF1-207ENST00000531727 ABCC12Q96J65 1359 aa22.1■■□□□ 1.13
CPSF1-207ENST00000531727 IBTKQ9P2D0 1353 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-207ENST00000531727 UBN2Q6ZU65 1347 aa22.08■■□□□ 1.13
CPSF1-207ENST00000531727 POTECB2RU33 542 aa22.08■■□□□ 1.13
CPSF1-207ENST00000531727 ALDH1B1P30837 517 aa22.08■■□□□ 1.13
CPSF1-207ENST00000531727 NUTM1Q86Y26 1132 aa22.08■■□□□ 1.13
CPSF1-207ENST00000531727 CCDC146Q8IYE0 955 aa22.08■■□□□ 1.13
CPSF1-207ENST00000531727 RIC1Q4ADV7 1423 aa22.07■■□□□ 1.12
CPSF1-207ENST00000531727 GPTP24298 496 aa22.07■■□□□ 1.12
CPSF1-207ENST00000531727 WDR43Q15061 677 aaKnown RBP eCLIP22.07■■□□□ 1.12
CPSF1-207ENST00000531727 PDIA6Q15084 440 aa22.07■■□□□ 1.12
CPSF1-207ENST00000531727 CRY2Q49AN0 593 aa22.07■■□□□ 1.12
CPSF1-207ENST00000531727 GIGYF2Q6Y7W6 1299 aaKnown RBP22.07■■□□□ 1.12
CPSF1-207ENST00000531727 LRP10Q7Z4F1 713 aa22.07■■□□□ 1.12
CPSF1-207ENST00000531727 RUNDC1Q96C34 613 aa22.07■■□□□ 1.12
CPSF1-207ENST00000531727 EIF2S2P20042 333 aaKnown RBP22.06■■□□□ 1.12
CPSF1-207ENST00000531727 FKBP4Q02790 459 aaKnown RBP eCLIP22.06■■□□□ 1.12
CPSF1-207ENST00000531727 ZNF34Q8IZ26 560 aa22.06■■□□□ 1.12
CPSF1-207ENST00000531727 NEUROD2Q15784 382 aa22.05■■□□□ 1.12
CPSF1-207ENST00000531727 SUSD4Q5VX71 490 aa22.05■■□□□ 1.12
CPSF1-207ENST00000531727 RTKN2Q8IZC4 609 aa22.05■■□□□ 1.12
CPSF1-207ENST00000531727 HTRA3P83110 453 aa22.04■■□□□ 1.12
CPSF1-207ENST00000531727 OLFM4Q6UX06 510 aa22.04■■□□□ 1.12
CPSF1-207ENST00000531727 TRIM35Q9UPQ4 493 aa22.04■■□□□ 1.12
CPSF1-207ENST00000531727 DDNO94850 711 aaPredicted RBP22.03■■□□□ 1.12
CPSF1-207ENST00000531727 NTSR2O95665 410 aa22.03■■□□□ 1.12
CPSF1-207ENST00000531727 PROSER3Q2NL68 480 aa22.03■■□□□ 1.12
CPSF1-207ENST00000531727 ANKRD36CQ5JPF3 1778 aa22.02■■□□□ 1.12
CPSF1-207ENST00000531727 CHL1O00533 1208 aa22.02■■□□□ 1.12
CPSF1-207ENST00000531727 HOXA10P31260 410 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-207ENST00000531727 PARP10Q53GL7 1025 aa22.02■■□□□ 1.12
CPSF1-207ENST00000531727 PPP1R42Q7Z4L9 355 aa22.02■■□□□ 1.12
CPSF1-207ENST00000531727 RPGRQ92834 1020 aaKnown RBP22.02■■□□□ 1.12
CPSF1-207ENST00000531727 PRKRIP1Q9H875 184 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-207ENST00000531727 ZNF277Q9NRM2 450 aaPredicted RBP22.02■■□□□ 1.12
CPSF1-207ENST00000531727 ADAMTS8Q9UP79 889 aa22.02■■□□□ 1.12
CPSF1-207ENST00000531727 SNED1Q8TER0 1413 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms