RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 CCER1Q8TC90 406 aaPredicted RBP12.42□□□□□ -0.42
NEDD8-206ENST00000531430 ZNF277Q9NRM2 450 aaPredicted RBP12.42□□□□□ -0.42
NEDD8-206ENST00000531430 CAMTA2O94983 1202 aa12.41□□□□□ -0.42
NEDD8-206ENST00000531430 VEGFBP49765 207 aa12.41□□□□□ -0.42
NEDD8-206ENST00000531430 LDHDQ86WU2 507 aa12.41□□□□□ -0.42
NEDD8-206ENST00000531430 TAF1DQ9H5J8 278 aaPredicted RBP12.41□□□□□ -0.42
NEDD8-206ENST00000531430 USP16Q9Y5T5 823 aa12.41□□□□□ -0.42
NEDD8-206ENST00000531430 TMEM88BA6NKF7 163 aa12.4□□□□□ -0.42
NEDD8-206ENST00000531430 CCDC93Q567U6 631 aa12.4□□□□□ -0.42
NEDD8-206ENST00000531430 OLFM4Q6UX06 510 aa12.4□□□□□ -0.42
NEDD8-206ENST00000531430 TPTE2Q6XPS3 522 aa12.4□□□□□ -0.42
NEDD8-206ENST00000531430 TIAM2Q8IVF5 1701 aa12.4□□□□□ -0.43
NEDD8-206ENST00000531430 NRXN2Q9P2S2 1712 aa12.4□□□□□ -0.43
NEDD8-206ENST00000531430 LTBP3Q9NS15 1303 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 PRAMEF22A3QJZ6 481 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 NPR1P16066 1061 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 CTCFP49711 727 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-206ENST00000531430 LBX1P52954 281 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 PAXIP1Q6ZW49 1069 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-206ENST00000531430 NGEFQ8N5V2 710 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 HACL1Q9UJ83 578 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 NIP7Q9Y221 180 aaKnown RBP eCLIP12.39□□□□□ -0.43
NEDD8-206ENST00000531430 ZNF652Q9Y2D9 606 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 GJA3Q9Y6H8 435 aa12.39□□□□□ -0.43
NEDD8-206ENST00000531430 CLSPNQ9HAW4 1339 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 EPHX2P34913 555 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 GRM1Q13255 1194 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 DEFB115Q30KQ5 88 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 MAP1SQ66K74 1059 aaPredicted RBP12.38□□□□□ -0.43
NEDD8-206ENST00000531430 CNTROBQ8N137 903 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 SYNE4Q8N205 404 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 RTF1Q92541 710 aaKnown RBP12.38□□□□□ -0.43
NEDD8-206ENST00000531430 PHACTR3Q96KR7 559 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 ABT1Q9ULW3 272 aaKnown RBP12.38□□□□□ -0.43
NEDD8-206ENST00000531430 DLEC1Q9Y238 1755 aa12.38□□□□□ -0.43
NEDD8-206ENST00000531430 KIF7Q2M1P5 1343 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 VIRMAQ69YN4 1812 aaKnown RBP12.37□□□□□ -0.43
NEDD8-206ENST00000531430 SLX4Q8IY92 1834 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 TCERG1O14776 1098 aaKnown RBP12.37□□□□□ -0.43
NEDD8-206ENST00000531430 PRKAR2BP31323 418 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 FKBP4Q02790 459 aaKnown RBP eCLIP12.37□□□□□ -0.43
NEDD8-206ENST00000531430 RTKN2Q8IZC4 609 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 PRDM10Q9NQV6 1147 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 CNTNAP1P78357 1384 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 MRC1P22897 1456 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 ANKRD31Q8N7Z5 1873 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 ZNF541Q9H0D2 1346 aa12.37□□□□□ -0.43
NEDD8-206ENST00000531430 ITGBL1O95965 494 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-206ENST00000531430 SNRPA1P09661 255 aaKnown RBP12.36□□□□□ -0.43
NEDD8-206ENST00000531430 ALDH1B1P30837 517 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 MCM10Q7L590 875 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 C7orf43Q8WVR3 580 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 JDP2Q8WYK2 163 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 CACNA1SQ13698 1873 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 FER1L6Q2WGJ9 1857 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 RNF123Q5XPI4 1314 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 PASKQ96RG2 1323 aa12.36□□□□□ -0.43
NEDD8-206ENST00000531430 DICER1Q9UPY3 1922 aaKnown RBP12.35□□□□□ -0.43
NEDD8-206ENST00000531430 PER1O15534 1290 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-206ENST00000531430 IARSP41252 1262 aaKnown RBP12.35□□□□□ -0.43
NEDD8-206ENST00000531430 DCTN1Q14203 1278 aa12.35□□□□□ -0.43
NEDD8-206ENST00000531430 CLEC4GQ6UXB4 293 aa12.35□□□□□ -0.43
NEDD8-206ENST00000531430 PNMA8AQ86V59 439 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-206ENST00000531430 L3MBTL3Q96JM7 780 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-206ENST00000531430 CFAP53Q96M91 514 aa12.35□□□□□ -0.43
NEDD8-206ENST00000531430 MIS18AQ9NYP9 233 aa12.35□□□□□ -0.43
NEDD8-206ENST00000531430 U2AF1L5P0DN76 240 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-206ENST00000531430 EIF6P56537 245 aaKnown RBP12.34□□□□□ -0.43
NEDD8-206ENST00000531430 U2AF1Q01081 240 aaKnown RBP eCLIP12.34□□□□□ -0.43
NEDD8-206ENST00000531430 HLFQ16534 295 aa12.34□□□□□ -0.43
NEDD8-206ENST00000531430 WBP1LQ9NX94 342 aa12.34□□□□□ -0.43
NEDD8-206ENST00000531430 NUDCQ9Y266 331 aa12.34□□□□□ -0.43
NEDD8-206ENST00000531430 LMOD1P29536 600 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-206ENST00000531430 BEGAINQ9BUH8 593 aa12.33□□□□□ -0.44
NEDD8-206ENST00000531430 RRP7AQ9Y3A4 280 aaKnown RBP12.33□□□□□ -0.44
NEDD8-206ENST00000531430 WDR33Q9C0J8 1336 aaKnown RBP12.33□□□□□ -0.44
NEDD8-206ENST00000531430 COL11A2P13942 1736 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-206ENST00000531430 CCDC85CA6NKD9 419 aa12.32□□□□□ -0.44
NEDD8-206ENST00000531430 NBPF26B4DH59 902 aa12.32□□□□□ -0.44
NEDD8-206ENST00000531430 MAP2K1Q02750 393 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-206ENST00000531430 NBPF10Q6P3W6 841 aaKnown RBP12.32□□□□□ -0.44
NEDD8-206ENST00000531430 NUTM1Q86Y26 1132 aa12.32□□□□□ -0.44
NEDD8-206ENST00000531430 NBPF15Q8N660 670 aa12.32□□□□□ -0.44
NEDD8-206ENST00000531430 RPGRQ92834 1020 aaKnown RBP12.32□□□□□ -0.44
NEDD8-206ENST00000531430 CFAP44Q96MT7 982 aa12.32□□□□□ -0.44
NEDD8-206ENST00000531430 UBR2Q8IWV8 1755 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 FZD9O00144 591 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 HSPA8P11142 646 aaKnown RBP12.31□□□□□ -0.44
NEDD8-206ENST00000531430 GPTP24298 496 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 FMR1Q06787 632 aaKnown RBP eCLIP12.31□□□□□ -0.44
NEDD8-206ENST00000531430 GPC2Q8N158 579 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 LARGE2Q8N3Y3 721 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 ABHD8Q96I13 439 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 RSPH6AQ9H0K4 717 aa12.31□□□□□ -0.44
NEDD8-206ENST00000531430 TMX4Q9H1E5 349 aaPredicted RBP12.31□□□□□ -0.44
NEDD8-206ENST00000531430 MYL6BP14649 208 aa12.3□□□□□ -0.44
NEDD8-206ENST00000531430 EPS15P42566 896 aa12.3□□□□□ -0.44
NEDD8-206ENST00000531430 TAF7Q15545 349 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-206ENST00000531430 DDX21Q9NR30 783 aaKnown RBP eCLIP12.3□□□□□ -0.44
NEDD8-206ENST00000531430 KLRG2A4D1S0 409 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms