RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 USP17L17D6RBQ6 530 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 USP17L19D6RCP7 530 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 USP17L20D6RJB6 530 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 EFSO43281 561 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 PPP1R12BO60237 982 aaPredicted RBP7.48□□□□□ -1.21
CD44-219ENST00000525685 CD33P20138 364 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 IRS1P35568 1242 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 USP17L24Q0WX57 530 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 DPYDQ12882 1025 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 C1orf53Q5VUE5 145 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 VRTNQ9H8Y1 702 aa7.48□□□□□ -1.21
CD44-219ENST00000525685 ARID3CA6NKF2 412 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 ARAFP10398 606 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 LRRC69Q6ZNQ3 347 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 SLCO4C1Q6ZQN7 724 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 ANKMY2Q8IV38 441 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 TMEM151AQ8N4L1 468 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 GALNT6Q8NCL4 622 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 EDARADDQ8WWZ3 215 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 STRN4Q9NRL3 753 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 GGA1Q9UJY5 639 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 CHMP3Q9Y3E7 222 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 HCN4Q9Y3Q4 1203 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 CNTNAP5Q8WYK1 1306 aa7.47□□□□□ -1.21
CD44-219ENST00000525685 ATAD2Q6PL18 1390 aa7.46□□□□□ -1.21
CD44-219ENST00000525685 GDF11O95390 407 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 LAMC2Q13753 1193 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 KANK3Q6NY19 840 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 STAG2Q8N3U4 1231 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 GAS2L2Q8NHY3 880 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 RHPN1Q8TCX5 695 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 SCG3Q8WXD2 468 aaKnown RBP7.46□□□□□ -1.22
CD44-219ENST00000525685 PHACTR1Q9C0D0 580 aa7.46□□□□□ -1.22
CD44-219ENST00000525685 DNMT3AQ9Y6K1 912 aaPredicted RBP7.46□□□□□ -1.22
CD44-219ENST00000525685 BEND7Q8N7W2 519 aaPredicted RBP7.45□□□□□ -1.22
CD44-219ENST00000525685 ARXQ96QS3 562 aa7.45□□□□□ -1.22
CD44-219ENST00000525685 C2orf49Q9BVC5 232 aaPredicted RBP7.45□□□□□ -1.22
CD44-219ENST00000525685 MARK1Q9P0L2 795 aa7.45□□□□□ -1.22
CD44-219ENST00000525685 KLF15Q9UIH9 416 aa7.45□□□□□ -1.22
CD44-219ENST00000525685 NEURL1BA8MQ27 555 aa7.44□□□□□ -1.22
CD44-219ENST00000525685 EPXP11678 715 aa7.44□□□□□ -1.22
CD44-219ENST00000525685 PODNQ7Z5L7 613 aa7.44□□□□□ -1.22
CD44-219ENST00000525685 KCTD17Q8N5Z5 321 aa7.44□□□□□ -1.22
CD44-219ENST00000525685 HINFPQ9BQA5 517 aa7.44□□□□□ -1.22
CD44-219ENST00000525685 NEUROD4Q9HD90 331 aa7.44□□□□□ -1.22
CD44-219ENST00000525685 AVENQ9NQS1 362 aaPredicted RBP7.44□□□□□ -1.22
CD44-219ENST00000525685 PHF20L1A8MW92 1017 aa7.43□□□□□ -1.22
CD44-219ENST00000525685 LGR5O75473 907 aa7.43□□□□□ -1.22
CD44-219ENST00000525685 SNRPNP63162 240 aaKnown RBP7.43□□□□□ -1.22
CD44-219ENST00000525685 CCDC97Q96F63 343 aaPredicted RBP7.43□□□□□ -1.22
CD44-219ENST00000525685 HSH2DQ96JZ2 352 aa7.43□□□□□ -1.22
CD44-219ENST00000525685 ARID3AQ99856 593 aa7.43□□□□□ -1.22
CD44-219ENST00000525685 HOXB4P17483 251 aaPredicted RBP7.42□□□□□ -1.22
CD44-219ENST00000525685 IGFBP4P22692 258 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 ADH6P28332 368 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 GRIN2CQ14957 1233 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 ZNF468Q5VIY5 522 aaPredicted RBP7.42□□□□□ -1.22
CD44-219ENST00000525685 FCHSD1Q86WN1 690 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 ALDH16A1Q8IZ83 802 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 ZNF280CQ8ND82 737 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 CHMP7Q8WUX9 453 aaPredicted RBP7.42□□□□□ -1.22
CD44-219ENST00000525685 SUSD3Q96L08 255 aa7.42□□□□□ -1.22
CD44-219ENST00000525685 RFX1P22670 979 aa7.41□□□□□ -1.22
CD44-219ENST00000525685 PCBP4P57723 403 aaKnown RBP7.41□□□□□ -1.22
CD44-219ENST00000525685 SFSWAPQ12872 951 aaKnown RBP7.41□□□□□ -1.22
CD44-219ENST00000525685 CDCA8Q53HL2 280 aa7.41□□□□□ -1.22
CD44-219ENST00000525685 BTBD6Q96KE9 485 aa7.41□□□□□ -1.22
CD44-219ENST00000525685 ANKIB1Q9P2G1 1089 aa7.41□□□□□ -1.22
CD44-219ENST00000525685 TYRO3Q06418 890 aa7.4□□□□□ -1.22
CD44-219ENST00000525685 CEP63Q96MT8 703 aa7.4□□□□□ -1.22
CD44-219ENST00000525685 MKL2Q9ULH7 1088 aa7.4□□□□□ -1.22
CD44-219ENST00000525685 PRR12Q9ULL5 1215 aa7.4□□□□□ -1.22
CD44-219ENST00000525685 AMPD1P23109 780 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 WEE1P30291 646 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 KCNQ4P56696 695 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 SRPK2P78362 688 aaKnown RBP7.39□□□□□ -1.23
CD44-219ENST00000525685 FAM200AQ8TCP9 573 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 NGLY1Q96IV0 654 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 SLC30A3Q99726 388 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 RRAGCQ9HB90 399 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 BRD7Q9NPI1 651 aa7.39□□□□□ -1.23
CD44-219ENST00000525685 HIF1AQ16665 826 aa7.38□□□□□ -1.23
CD44-219ENST00000525685 RTN1Q16799 776 aa7.38□□□□□ -1.23
CD44-219ENST00000525685 LINC00114Q6XXX2 140 aa7.38□□□□□ -1.23
CD44-219ENST00000525685 DCAF5Q96JK2 942 aa7.38□□□□□ -1.23
CD44-219ENST00000525685 MDFIQ99750 246 aa7.38□□□□□ -1.23
CD44-219ENST00000525685 NOVA2Q9UNW9 492 aaKnown RBP7.38□□□□□ -1.23
CD44-219ENST00000525685 SIN3BO75182 1162 aa7.37□□□□□ -1.23
CD44-219ENST00000525685 DGKGP49619 791 aa7.37□□□□□ -1.23
CD44-219ENST00000525685 CHSY3Q70JA7 882 aa7.37□□□□□ -1.23
CD44-219ENST00000525685 BTLAQ7Z6A9 289 aa7.37□□□□□ -1.23
CD44-219ENST00000525685 SYT9Q86SS6 491 aa7.37□□□□□ -1.23
CD44-219ENST00000525685 SERPINA10Q9UK55 444 aa7.37□□□□□ -1.23
CD44-219ENST00000525685 FOXO3O43524 673 aa7.36□□□□□ -1.23
CD44-219ENST00000525685 SPEM2Q0P670 501 aa7.36□□□□□ -1.23
CD44-219ENST00000525685 ELOAQ14241 798 aaKnown RBP7.36□□□□□ -1.23
CD44-219ENST00000525685 IER5Q5VY09 327 aa7.36□□□□□ -1.23
CD44-219ENST00000525685 ZMIZ1Q9ULJ6 1067 aa7.36□□□□□ -1.23
CD44-219ENST00000525685 KCNH4Q9UQ05 1017 aa7.36□□□□□ -1.23
CD44-219ENST00000525685 BCS1LQ9Y276 419 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms