RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	MRS2	Q9HD23	443 aa		32.15	■■■□□ 2.74
PVT1-204	ENST00000517525	WWC3	Q9ULE0	1092 aa		32.15	■■■□□ 2.74
PVT1-204	ENST00000517525	MAP3K15	Q6ZN16	1313 aa		32.13	■■■□□ 2.73
PVT1-204	ENST00000517525	IFT57	Q9NWB7	429 aa		32.13	■■■□□ 2.73
PVT1-204	ENST00000517525	CCDC27	Q2M243	656 aa		32.12	■■■□□ 2.73
PVT1-204	ENST00000517525	CNBD1	Q8NA66	436 aa		32.12	■■■□□ 2.73
PVT1-204	ENST00000517525	PDE6B	P35913	854 aa		32.11	■■■□□ 2.73
PVT1-204	ENST00000517525	HLF	Q16534	295 aa		32.11	■■■□□ 2.73
PVT1-204	ENST00000517525	LAS1L	Q9Y4W2	734 aa	Known RBP	32.1	■■■□□ 2.73
PVT1-204	ENST00000517525		H0YIN7	160 aa		32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	MYL6B	P14649	208 aa		32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	EIF2S2	P20042	333 aa	Known RBP	32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	GNAI1	P63096	354 aa		32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	KIF6	Q6ZMV9	814 aa		32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	TTLL7	Q6ZT98	887 aa		32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	NIP7	Q9Y221	180 aa	Known RBP eCLIP	32.09	■■■□□ 2.73
PVT1-204	ENST00000517525	C2CD5	Q86YS7	1000 aa		32.08	■■■□□ 2.73
PVT1-204	ENST00000517525	MBIP	Q9NS73	344 aa		32.08	■■■□□ 2.73
PVT1-204	ENST00000517525	ATP10D	Q9P241	1426 aa		32.08	■■■□□ 2.73
PVT1-204	ENST00000517525	ADCY9	O60503	1353 aa		32.07	■■■□□ 2.73
PVT1-204	ENST00000517525	ST5	P78524	1137 aa		32.07	■■■□□ 2.72
PVT1-204	ENST00000517525	TPTE2	Q6XPS3	522 aa		32.07	■■■□□ 2.72
PVT1-204	ENST00000517525	NBPF5P	Q86XG9	351 aa	Predicted RBP	32.07	■■■□□ 2.72
PVT1-204	ENST00000517525	NGEF	Q8N5V2	710 aa		32.07	■■■□□ 2.72
PVT1-204	ENST00000517525	ARFGEF1	Q9Y6D6	1849 aa		32.07	■■■□□ 2.72
PVT1-204	ENST00000517525	KRT24	Q2M2I5	525 aa		32.06	■■■□□ 2.72
PVT1-204	ENST00000517525	DDX21	Q9NR30	783 aa	Known RBP eCLIP	32.06	■■■□□ 2.72
PVT1-204	ENST00000517525	TTLL6	Q8N841	843 aa		32.05	■■■□□ 2.72
PVT1-204	ENST00000517525	KLRG2	A4D1S0	409 aa	Predicted RBP	32.04	■■■□□ 2.72
PVT1-204	ENST00000517525	GIGYF2	Q6Y7W6	1299 aa	Known RBP	32.04	■■■□□ 2.72
PVT1-204	ENST00000517525	DLEC1	Q9Y238	1755 aa		32.04	■■■□□ 2.72
PVT1-204	ENST00000517525	PROSER3	Q2NL68	480 aa		32.03	■■■□□ 2.72
PVT1-204	ENST00000517525	ARHGAP27	Q6ZUM4	889 aa		32.03	■■■□□ 2.72
PVT1-204	ENST00000517525	ANKRD31	Q8N7Z5	1873 aa		32.03	■■■□□ 2.72
PVT1-204	ENST00000517525	IBTK	Q9P2D0	1353 aa	Predicted RBP	32.02	■■■□□ 2.72
PVT1-204	ENST00000517525	DUSP27	Q5VZP5	1158 aa		32.01	■■■□□ 2.71
PVT1-204	ENST00000517525	ZNF34	Q8IZ26	560 aa		32.01	■■■□□ 2.71
PVT1-204	ENST00000517525	NPHP1	O15259	732 aa		32	■■■□□ 2.71
PVT1-204	ENST00000517525	STYK1	Q6J9G0	422 aa		32	■■■□□ 2.71
PVT1-204	ENST00000517525	WWC1	Q8IX03	1113 aa		32	■■■□□ 2.71
PVT1-204	ENST00000517525	CCDC24	Q8N4L8	307 aa		32	■■■□□ 2.71
PVT1-204	ENST00000517525	NYX	Q9GZU5	481 aa		32	■■■□□ 2.71
PVT1-204	ENST00000517525	ZBTB3	Q9H5J0	574 aa		32	■■■□□ 2.71
PVT1-204	ENST00000517525	SRGN	P10124	158 aa		31.99	■■■□□ 2.71
PVT1-204	ENST00000517525	HDGFL1	Q5TGJ6	251 aa		31.99	■■■□□ 2.71
PVT1-204	ENST00000517525	DBF4	Q9UBU7	674 aa	Predicted RBP	31.98	■■■□□ 2.71
PVT1-204	ENST00000517525	IL16	Q14005	1332 aa		31.98	■■■□□ 2.71
PVT1-204	ENST00000517525	ANXA1	P04083	346 aa		31.97	■■■□□ 2.71
PVT1-204	ENST00000517525	COPS6	Q7L5N1	327 aa		31.97	■■■□□ 2.71
PVT1-204	ENST00000517525	NUP98	P52948	1817 aa		31.97	■■■□□ 2.71
PVT1-204	ENST00000517525	PARP10	Q53GL7	1025 aa		31.96	■■■□□ 2.71
PVT1-204	ENST00000517525	XAGE3	Q8WTP9	111 aa		31.96	■■■□□ 2.71
PVT1-204	ENST00000517525	NECTIN2	Q92692	538 aa		31.96	■■■□□ 2.71
PVT1-204	ENST00000517525	CNKSR1	Q969H4	720 aa		31.96	■■■□□ 2.71
PVT1-204	ENST00000517525	MASTL	Q96GX5	879 aa		31.96	■■■□□ 2.71
PVT1-204	ENST00000517525	CHPF2	Q9P2E5	772 aa		31.96	■■■□□ 2.71
PVT1-204	ENST00000517525	CHMP4A	Q9BY43	222 aa		31.95	■■■□□ 2.71
PVT1-204	ENST00000517525	UBN2	Q6ZU65	1347 aa		31.95	■■■□□ 2.7
PVT1-204	ENST00000517525	RIC1	Q4ADV7	1423 aa		31.94	■■■□□ 2.7
PVT1-204	ENST00000517525	ZNF622	Q969S3	477 aa	Known RBP eCLIP	31.94	■■■□□ 2.7	2e-7	■■■■□ 24.3
PVT1-204	ENST00000517525	HYPK	Q9NX55	129 aa		31.94	■■■□□ 2.7
PVT1-204	ENST00000517525	HSP90AB3P	Q58FF7	597 aa		31.93	■■■□□ 2.7
PVT1-204	ENST00000517525	NPR1	P16066	1061 aa		31.92	■■■□□ 2.7
PVT1-204	ENST00000517525	COL11A2	P13942	1736 aa	Predicted RBP	31.92	■■■□□ 2.7
PVT1-204	ENST00000517525	GTF2E1	P29083	439 aa	Predicted RBP	31.91	■■■□□ 2.7
PVT1-204	ENST00000517525	SUSD4	Q5VX71	490 aa		31.91	■■■□□ 2.7
PVT1-204	ENST00000517525	NTSR2	O95665	410 aa		31.9	■■■□□ 2.7
PVT1-204	ENST00000517525	GPT	P24298	496 aa		31.9	■■■□□ 2.7
PVT1-204	ENST00000517525	CRY2	Q49AN0	593 aa		31.9	■■■□□ 2.7
PVT1-204	ENST00000517525	PPP1R42	Q7Z4L9	355 aa		31.9	■■■□□ 2.7
PVT1-204	ENST00000517525	C8orf58	Q8NAV2	365 aa		31.9	■■■□□ 2.7
PVT1-204	ENST00000517525	FAM177B	A6PVY3	158 aa		31.89	■■■□□ 2.7
PVT1-204	ENST00000517525	AIMP1	Q12904	312 aa	Known RBP	31.89	■■■□□ 2.7
PVT1-204	ENST00000517525	C9orf131	Q5VYM1	1079 aa		31.89	■■■□□ 2.7
PVT1-204	ENST00000517525	WDR63	Q8IWG1	891 aa		31.89	■■■□□ 2.7
PVT1-204	ENST00000517525	PLBD2	Q8NHP8	589 aa		31.89	■■■□□ 2.7
PVT1-204	ENST00000517525	RNF123	Q5XPI4	1314 aa		31.89	■■■□□ 2.7
PVT1-204	ENST00000517525	TCIRG1	Q13488	830 aa		31.88	■■■□□ 2.69
PVT1-204	ENST00000517525	ERFE	Q4G0M1	354 aa		31.87	■■■□□ 2.69
PVT1-204	ENST00000517525	ABCC12	Q96J65	1359 aa		31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	SLC10A5	Q5PT55	438 aa		31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	SOGA3	Q5TF21	947 aa		31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	PRPF40B	Q6NWY9	871 aa	Known RBP	31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	ANKRD13D	Q6ZTN6	518 aa		31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	NUTM1	Q86Y26	1132 aa		31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	C7orf43	Q8WVR3	580 aa		31.86	■■■□□ 2.69
PVT1-204	ENST00000517525	UTP14A	Q9BVJ6	771 aa	Known RBP	31.85	■■■□□ 2.69
PVT1-204	ENST00000517525	ZC3H4	Q9UPT8	1303 aa	Known RBP	31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	NFKBIE	O00221	500 aa		31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	ELL2	O00472	640 aa	Predicted RBP	31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	HOXA10	P31260	410 aa	Predicted RBP	31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	NLRP10	Q86W26	655 aa		31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	FAM9B	Q8IZU0	186 aa		31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	GPBP1L1	Q9HC44	474 aa	Predicted RBP	31.84	■■■□□ 2.69
PVT1-204	ENST00000517525	LTBP3	Q9NS15	1303 aa		31.83	■■■□□ 2.69
PVT1-204	ENST00000517525	C21orf2	O43822	256 aa		31.83	■■■□□ 2.69
PVT1-204	ENST00000517525	LMNB1	P20700	586 aa		31.83	■■■□□ 2.69
PVT1-204	ENST00000517525	ALDH1B1	P30837	517 aa		31.83	■■■□□ 2.69
PVT1-204	ENST00000517525	CCDC30	Q5VVM6	783 aa		31.83	■■■□□ 2.69
PVT1-204	ENST00000517525	TSR2	Q969E8	191 aa	Known RBP	31.82	■■■□□ 2.68

Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms