RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PROCP04070 461 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 INHAP05111 366 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PSAPP07602 524 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 EPXP11678 715 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 RHOQP17081 205 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 MSX1P28360 303 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PLA2G4AP47712 749 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 GDF10P55107 478 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 BRPF1P55201 1214 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PSMA6P60900 246 aaKnown RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 CYP27A1Q02318 531 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 LRP8Q14114 963 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 UVSSAQ2YD98 709 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 RTL5Q5HYW3 569 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 ELMSAN1Q6PJG2 1045 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 IGF2-ASQ6U949 168 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 LYPD4Q6UWN0 246 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 WFDC8Q8IUA0 241 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 AGBL5Q8NDL9 886 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 LRRN4Q8WUT4 740 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 SYTL4Q96C24 671 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 ASIC4Q96FT7 647 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 BORCS6Q96GS4 357 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 XAGE2Q96GT9 111 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 BTBD6Q96KE9 485 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 CEP63Q96MT8 703 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 SLC38A3Q99624 504 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 METTL22Q9BUU2 404 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 GNL3Q9BVP2 549 aaKnown RBP eCLIP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PLVAPQ9BX97 442 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 UBE2OQ9C0C9 1292 aaKnown RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 MRPL18Q9H0U6 180 aaKnown RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 IGFLR1Q9H665 355 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 SLC24A3Q9HC58 644 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PRDM6Q9NQX0 595 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 TMPRSS4Q9NRS4 437 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PCMTD2Q9NV79 361 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 CEP126Q9P2H0 1117 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 LIMD1Q9UGP4 676 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 GGA1Q9UJY5 639 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 ANGEL1Q9UNK9 670 aaKnown RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 KCNH4Q9UQ05 1017 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 CCDC9Q9Y3X0 531 aaKnown RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 CNTNAP5Q8WYK1 1306 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 SHROOM4Q9ULL8 1493 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 M0R2N6 131 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 GPR25O00155 361 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 TRAK2O60296 914 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 LILRA1O75019 489 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ITGB2P05107 769 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 FBXO45P0C2W1 286 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 MAPTP10636 758 aaKnown RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 PDIA4P13667 645 aaKnown RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ADH7P40394 386 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ABL2P42684 1182 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 PHKA2P46019 1235 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 GTF2IP78347 998 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 TBC1D8BQ0IIM8 1120 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 SPEM2Q0P670 501 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 CCINQ13939 588 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 DBN1Q16643 649 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 C4orf48Q5BLP8 95 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ARTNQ5T4W7 220 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 FOXD4L5Q5VV16 416 aaPredicted RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 IER5Q5VY09 327 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 B4GALNT3Q6L9W6 998 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ARHGAP27Q6ZUM4 889 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 SYT9Q86SS6 491 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 TXNRD3Q86VQ6 643 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 STK11IPQ8N1F8 1099 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 STAG2Q8N3U4 1231 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 LARGE2Q8N3Y3 721 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 PLPP7Q8NBV4 271 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZNF417Q8TAU3 575 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 TNFRSF25Q93038 417 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 TP53INP1Q96A56 240 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ACDQ96AP0 544 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 LENG1Q96BZ8 264 aaPredicted RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ABHD17AQ96GS6 310 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 CCDC120Q96HB5 630 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 FBXL18Q96ME1 805 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZNF587Q96SQ5 575 aaPredicted RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 HINFPQ9BQA5 517 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZCCHC2Q9C0B9 1178 aaKnown RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 RUBCNLQ9H714 662 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 JPH1Q9HDC5 661 aaPredicted RBP0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 BRD7Q9NPI1 651 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ATG3Q9NT62 314 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 PPP4R2Q9NY27 417 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 FRRS1LQ9P0K9 344 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 STOML1Q9UBI4 398 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 RNF112Q9ULX5 631 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 HIF3AQ9Y2N7 669 aa0.95□□□□□ -2.26
RNU4-54P-201ENST00000516428 ACIN1Q9UKV3 1341 aaKnown RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 SENP3-EIF4A1A0A087X0R7 540 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 DCDC2BA2VCK2 349 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 SFI1A8K8P3 1242 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 C1QTNF9BB2RNN3 333 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 M0R082 166 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 GAS2O43903 313 aaKnown RBP0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms