RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 NBPF26B4DH59 902 aa25.72■■□□□ 1.71
CTSD-206ENST00000497544 HSPA1AP0DMV8 641 aaKnown RBP25.72■■□□□ 1.71
CTSD-206ENST00000497544 HSPA1BP0DMV9 641 aaKnown RBP25.72■■□□□ 1.71
CTSD-206ENST00000497544 IL6STP40189 918 aaPredicted RBP25.72■■□□□ 1.71
CTSD-206ENST00000497544 NBPF10Q6P3W6 841 aaKnown RBP25.72■■□□□ 1.71
CTSD-206ENST00000497544 NBPF15Q8N660 670 aa25.72■■□□□ 1.71
CTSD-206ENST00000497544 STK31Q9BXU1 1019 aa25.72■■□□□ 1.71
CTSD-206ENST00000497544 DDX21Q9NR30 783 aaKnown RBP eCLIP25.72■■□□□ 1.71
CTSD-206ENST00000497544 DBF4Q9UBU7 674 aaPredicted RBP25.72■■□□□ 1.71
CTSD-206ENST00000497544 PHF14O94880 888 aa25.71■■□□□ 1.71
CTSD-206ENST00000497544 TRAPPC3LQ5T215 181 aa25.71■■□□□ 1.71
CTSD-206ENST00000497544 FLAD1Q8NFF5 587 aa25.71■■□□□ 1.71
CTSD-206ENST00000497544 CHPF2Q9P2E5 772 aa25.71■■□□□ 1.71
CTSD-206ENST00000497544 TCERG1O14776 1098 aaKnown RBP25.7■■□□□ 1.7
CTSD-206ENST00000497544 SSFA2P28290 1259 aa25.7■■□□□ 1.7
CTSD-206ENST00000497544 FSTL1Q12841 308 aa25.7■■□□□ 1.7
CTSD-206ENST00000497544 PDIA6Q15084 440 aa25.7■■□□□ 1.7
CTSD-206ENST00000497544 KIAA1551Q9HCM1 1747 aa25.7■■□□□ 1.7
CTSD-206ENST00000497544 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.69■■□□□ 1.7
CTSD-206ENST00000497544 ANXA1P04083 346 aa25.69■■□□□ 1.7
CTSD-206ENST00000497544 EIF5P55010 431 aaKnown RBP25.69■■□□□ 1.7
CTSD-206ENST00000497544 SMIM5Q71RC9 77 aa25.69■■□□□ 1.7
CTSD-206ENST00000497544 ZNF428Q96B54 188 aa25.69■■□□□ 1.7
CTSD-206ENST00000497544 A0A087WZG4 1122 aa25.68■■□□□ 1.7
CTSD-206ENST00000497544 ADRA2BP18089 450 aa25.68■■□□□ 1.7
CTSD-206ENST00000497544 HYPKQ9NX55 129 aa25.68■■□□□ 1.7
CTSD-206ENST00000497544 PCDH10Q9P2E7 1040 aa25.68■■□□□ 1.7
CTSD-206ENST00000497544 UBR3Q6ZT12 1888 aa25.68■■□□□ 1.7
CTSD-206ENST00000497544 N4BP2Q86UW6 1770 aaPredicted RBP25.67■■□□□ 1.7
CTSD-206ENST00000497544 SLC4A2P04920 1241 aa25.67■■□□□ 1.7
CTSD-206ENST00000497544 PROSER3Q2NL68 480 aa25.67■■□□□ 1.7
CTSD-206ENST00000497544 ARHGEF1Q92888 912 aaKnown RBP25.67■■□□□ 1.7
CTSD-206ENST00000497544 RFC4P35249 363 aa25.66■■□□□ 1.7
CTSD-206ENST00000497544 AMIGO3Q86WK7 504 aa25.66■■□□□ 1.7
CTSD-206ENST00000497544 C16orf71Q8IYS4 520 aaPredicted RBP25.66■■□□□ 1.7
CTSD-206ENST00000497544 CACNA1FO60840 1977 aa25.65■■□□□ 1.7
CTSD-206ENST00000497544 COL15A1P39059 1388 aa25.65■■□□□ 1.7
CTSD-206ENST00000497544 KIF13BQ9NQT8 1826 aa25.65■■□□□ 1.7
CTSD-206ENST00000497544 AIMP1Q12904 312 aaKnown RBP25.64■■□□□ 1.7
CTSD-206ENST00000497544 ALDH1L2Q3SY69 923 aa25.64■■□□□ 1.7
CTSD-206ENST00000497544 COPS6Q7L5N1 327 aa25.63■■□□□ 1.69
CTSD-206ENST00000497544 DZIP3Q86Y13 1208 aaKnown RBP25.63■■□□□ 1.69
CTSD-206ENST00000497544 TBC1D2BQ9UPU7 963 aa25.63■■□□□ 1.69
CTSD-206ENST00000497544 ZPR1O75312 459 aa25.62■■□□□ 1.69
CTSD-206ENST00000497544 XAGE3Q8WTP9 111 aa25.62■■□□□ 1.69
CTSD-206ENST00000497544 LRP10Q7Z4F1 713 aa25.61■■□□□ 1.69
CTSD-206ENST00000497544 SSH1Q8WYL5 1049 aa25.61■■□□□ 1.69
CTSD-206ENST00000497544 PHAXQ9H814 394 aaKnown RBP25.61■■□□□ 1.69
CTSD-206ENST00000497544 SMC4Q9NTJ3 1288 aa25.61■■□□□ 1.69
CTSD-206ENST00000497544 PXDNLA1KZ92 1463 aa25.6■■□□□ 1.69
CTSD-206ENST00000497544 RARSP54136 660 aaKnown RBP25.6■■□□□ 1.69
CTSD-206ENST00000497544 KIF6Q6ZMV9 814 aa25.6■■□□□ 1.69
CTSD-206ENST00000497544 BCL2L13Q9BXK5 485 aa25.6■■□□□ 1.69
CTSD-206ENST00000497544 NARFQ9UHQ1 456 aa25.6■■□□□ 1.69
CTSD-206ENST00000497544 TNRC6CQ9HCJ0 1690 aaKnown RBP25.6■■□□□ 1.69
CTSD-206ENST00000497544 TTLL7Q6ZT98 887 aa25.59■■□□□ 1.69
CTSD-206ENST00000497544 MRPL50Q8N5N7 158 aaKnown RBP25.59■■□□□ 1.69
CTSD-206ENST00000497544 BRCA1P38398 1863 aaKnown RBP25.58■■□□□ 1.69
CTSD-206ENST00000497544 C10orf71Q711Q0 1435 aa25.57■■□□□ 1.68
CTSD-206ENST00000497544 DDX58O95786 925 aaKnown RBP25.57■■□□□ 1.68
CTSD-206ENST00000497544 G2E3Q7L622 706 aa25.57■■□□□ 1.68
CTSD-206ENST00000497544 SRP68Q9UHB9 627 aaKnown RBP25.57■■□□□ 1.68
CTSD-206ENST00000497544 FLIIQ13045 1269 aa25.56■■□□□ 1.68
CTSD-206ENST00000497544 USPL1Q5W0Q7 1092 aa25.56■■□□□ 1.68
CTSD-206ENST00000497544 ANKRD13DQ6ZTN6 518 aa25.56■■□□□ 1.68
CTSD-206ENST00000497544 MAP3K15Q6ZN16 1313 aa25.56■■□□□ 1.68
CTSD-206ENST00000497544 USP42Q9H9J4 1324 aaKnown RBP25.56■■□□□ 1.68
CTSD-206ENST00000497544 ERVV-1B6SEH8 477 aa25.55■■□□□ 1.68
CTSD-206ENST00000497544 ARHGAP27Q6ZUM4 889 aa25.55■■□□□ 1.68
CTSD-206ENST00000497544 RIC3Q7Z5B4 369 aa25.55■■□□□ 1.68
CTSD-206ENST00000497544 ZBTB3Q9H5J0 574 aa25.55■■□□□ 1.68
CTSD-206ENST00000497544 BCS1LQ9Y276 419 aa25.55■■□□□ 1.68
CTSD-206ENST00000497544 CAMTA2O94983 1202 aa25.54■■□□□ 1.68
CTSD-206ENST00000497544 FKBP5Q13451 457 aaPredicted RBP25.54■■□□□ 1.68
CTSD-206ENST00000497544 PLBD2Q8NHP8 589 aa25.54■■□□□ 1.68
CTSD-206ENST00000497544 RCAN3Q9UKA8 241 aa25.54■■□□□ 1.68
CTSD-206ENST00000497544 ZNF652Q9Y2D9 606 aa25.54■■□□□ 1.68
CTSD-206ENST00000497544 BCAR3O75815 825 aa25.53■■□□□ 1.68
CTSD-206ENST00000497544 C4AP0C0L4 1744 aa25.52■■□□□ 1.68
CTSD-206ENST00000497544 ARFGEF1Q9Y6D6 1849 aa25.52■■□□□ 1.68
CTSD-206ENST00000497544 GYS1P13807 737 aa25.52■■□□□ 1.68
CTSD-206ENST00000497544 BRPF1P55201 1214 aaPredicted RBP25.52■■□□□ 1.68
CTSD-206ENST00000497544 C9orf131Q5VYM1 1079 aa25.52■■□□□ 1.68
CTSD-206ENST00000497544 CLEC4GQ6UXB4 293 aa25.52■■□□□ 1.68
CTSD-206ENST00000497544 NLGN1Q8N2Q7 840 aa25.52■■□□□ 1.68
CTSD-206ENST00000497544 HLFQ16534 295 aa25.51■■□□□ 1.67
CTSD-206ENST00000497544 KSR2Q6VAB6 950 aa25.51■■□□□ 1.67
CTSD-206ENST00000497544 RRAGCQ9HB90 399 aa25.51■■□□□ 1.67
CTSD-206ENST00000497544 RGL2O15211 777 aa25.5■■□□□ 1.67
CTSD-206ENST00000497544 GIGYF2Q6Y7W6 1299 aaKnown RBP25.5■■□□□ 1.67
CTSD-206ENST00000497544 SMC1BQ8NDV3 1235 aa25.5■■□□□ 1.67
CTSD-206ENST00000497544 BCL2L12Q9HB09 334 aa25.5■■□□□ 1.67
CTSD-206ENST00000497544 NOB1Q9ULX3 412 aaKnown RBP25.5■■□□□ 1.67
CTSD-206ENST00000497544 PTPRCP08575 1304 aa25.49■■□□□ 1.67
CTSD-206ENST00000497544 KDM2BQ8NHM5 1336 aa25.49■■□□□ 1.67
CTSD-206ENST00000497544 KIF16BQ96L93 1317 aa25.49■■□□□ 1.67
CTSD-206ENST00000497544 PI4KAP2A4QPH2 592 aa25.49■■□□□ 1.67
CTSD-206ENST00000497544 FKBP8Q14318 412 aa25.49■■□□□ 1.67
CTSD-206ENST00000497544 PI4KAP1Q8N8J0 262 aa25.49■■□□□ 1.67
CTSD-206ENST00000497544 IPO8O15397 1037 aaKnown RBP25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms