RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 CACNA1SQ13698 1873 aa12.65□□□□□ -0.38
MSH5-218ENST00000494646 KDM3BQ7LBC6 1761 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 MYL6BP14649 208 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 PDE6BP35913 854 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 TMPOP42166 694 aaKnown RBP12.64□□□□□ -0.39
MSH5-218ENST00000494646 RASSF7Q02833 373 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 RNF181Q9P0P0 153 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 SCN7AQ01118 1682 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 BCORQ6W2J9 1755 aa12.64□□□□□ -0.39
MSH5-218ENST00000494646 KIF3CO14782 793 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 CLEC4GQ6UXB4 293 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 CNBD1Q8NA66 436 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 TSPYL4Q9UJ04 414 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 ADAMTS8Q9UP79 889 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 NIP7Q9Y221 180 aaKnown RBP eCLIP12.63□□□□□ -0.39
MSH5-218ENST00000494646 DLEC1Q9Y238 1755 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 CEP350Q5VT06 3117 aa12.63□□□□□ -0.39
MSH5-218ENST00000494646 NUP98P52948 1817 aa12.62□□□□□ -0.39
MSH5-218ENST00000494646 C21orf2O43822 256 aa12.62□□□□□ -0.39
MSH5-218ENST00000494646 EIF2S2P20042 333 aaKnown RBP12.62□□□□□ -0.39
MSH5-218ENST00000494646 PRELPP51888 382 aa12.62□□□□□ -0.39
MSH5-218ENST00000494646 ST5P78524 1137 aa12.62□□□□□ -0.39
MSH5-218ENST00000494646 WDR43Q15061 677 aaKnown RBP eCLIP12.62□□□□□ -0.39
MSH5-218ENST00000494646 NBPF5PQ86XG9 351 aaPredicted RBP12.62□□□□□ -0.39
MSH5-218ENST00000494646 NMRK2Q9NPI5 230 aa12.62□□□□□ -0.39
MSH5-218ENST00000494646 ZNF652Q9Y2D9 606 aa12.62□□□□□ -0.39
MSH5-218ENST00000494646 LAS1LQ9Y4W2 734 aaKnown RBP12.62□□□□□ -0.39
MSH5-218ENST00000494646 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
MSH5-218ENST00000494646 PRKRIP1Q9H875 184 aaPredicted RBP12.61□□□□□ -0.39
MSH5-218ENST00000494646 RRAGCQ9HB90 399 aa12.61□□□□□ -0.39
MSH5-218ENST00000494646 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
MSH5-218ENST00000494646 SLX4Q8IY92 1834 aa12.6□□□□□ -0.39
MSH5-218ENST00000494646 GTF2E1P29083 439 aaPredicted RBP12.6□□□□□ -0.39
MSH5-218ENST00000494646 TPTE2Q6XPS3 522 aa12.6□□□□□ -0.39
MSH5-218ENST00000494646 NECTIN2Q92692 538 aa12.6□□□□□ -0.39
MSH5-218ENST00000494646 RUNDC1Q96C34 613 aa12.6□□□□□ -0.39
MSH5-218ENST00000494646 PDZRN3Q9UPQ7 1066 aa12.6□□□□□ -0.39
MSH5-218ENST00000494646 COL11A2P13942 1736 aaPredicted RBP12.59□□□□□ -0.39
MSH5-218ENST00000494646 NFKBIEO00221 500 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 ANXA1P04083 346 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 SRGNP10124 158 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 LMNB1P20700 586 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 MASTLQ96GX5 879 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 ZBTB3Q9H5J0 574 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 TRIM35Q9UPQ4 493 aa12.59□□□□□ -0.39
MSH5-218ENST00000494646 GPTP24298 496 aa12.58□□□□□ -0.4
MSH5-218ENST00000494646 LMOD3Q0VAK6 560 aa12.58□□□□□ -0.4
MSH5-218ENST00000494646 KIF6Q6ZMV9 814 aa12.58□□□□□ -0.4
MSH5-218ENST00000494646 NUTM1Q86Y26 1132 aa12.58□□□□□ -0.4
MSH5-218ENST00000494646 CNKSR1Q969H4 720 aa12.58□□□□□ -0.4
MSH5-218ENST00000494646 MAP3K15Q6ZN16 1313 aa12.58□□□□□ -0.4
MSH5-218ENST00000494646 ERVV-1B6SEH8 477 aa12.57□□□□□ -0.4
MSH5-218ENST00000494646 KRT24Q2M2I5 525 aa12.57□□□□□ -0.4
MSH5-218ENST00000494646 STYK1Q6J9G0 422 aa12.57□□□□□ -0.4
MSH5-218ENST00000494646 FER1L6Q2WGJ9 1857 aa12.57□□□□□ -0.4
MSH5-218ENST00000494646 TOMM70O94826 608 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 HSPA6P17066 643 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 AIMP1Q12904 312 aaKnown RBP12.56□□□□□ -0.4
MSH5-218ENST00000494646 PDIA6Q15084 440 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 PROSER3Q2NL68 480 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 ERFEQ4G0M1 354 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 PRPF40BQ6NWY9 871 aaKnown RBP12.56□□□□□ -0.4
MSH5-218ENST00000494646 C16orf71Q8IYS4 520 aaPredicted RBP12.56□□□□□ -0.4
MSH5-218ENST00000494646 BABAM1Q9NWV8 329 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 KDM2BQ8NHM5 1336 aa12.56□□□□□ -0.4
MSH5-218ENST00000494646 DICER1Q9UPY3 1922 aaKnown RBP12.55□□□□□ -0.4
MSH5-218ENST00000494646 CHL1O00533 1208 aa12.55□□□□□ -0.4
MSH5-218ENST00000494646 NPR1P16066 1061 aa12.55□□□□□ -0.4
MSH5-218ENST00000494646 SUSD4Q5VX71 490 aa12.55□□□□□ -0.4
MSH5-218ENST00000494646 OLFM4Q6UX06 510 aa12.55□□□□□ -0.4
MSH5-218ENST00000494646 KLRG2A4D1S0 409 aaPredicted RBP12.54□□□□□ -0.4
MSH5-218ENST00000494646 GLTPD2A6NH11 291 aa12.54□□□□□ -0.4
MSH5-218ENST00000494646 APAF1O14727 1248 aa12.54□□□□□ -0.4
MSH5-218ENST00000494646 RGL2O15211 777 aa12.54□□□□□ -0.4
MSH5-218ENST00000494646 GIGYF2Q6Y7W6 1299 aaKnown RBP12.54□□□□□ -0.4
MSH5-218ENST00000494646 COPS6Q7L5N1 327 aa12.54□□□□□ -0.4
MSH5-218ENST00000494646 NYXQ9GZU5 481 aa12.54□□□□□ -0.4
MSH5-218ENST00000494646 ALDH1B1P30837 517 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 ZEB1P37275 1124 aaPredicted RBP12.53□□□□□ -0.4
MSH5-218ENST00000494646 CCDC184Q52MB2 194 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 LRP10Q7Z4F1 713 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 ZNF34Q8IZ26 560 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 ERBB4Q15303 1308 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 UBN2Q6ZU65 1347 aa12.53□□□□□ -0.4
MSH5-218ENST00000494646 ARFGEF2Q9Y6D5 1785 aa12.52□□□□□ -0.41
MSH5-218ENST00000494646 TCERG1O14776 1098 aaKnown RBP12.52□□□□□ -0.41
MSH5-218ENST00000494646 XAGE3Q8WTP9 111 aa12.52□□□□□ -0.41
MSH5-218ENST00000494646 TAOK3Q9H2K8 898 aa12.52□□□□□ -0.41
MSH5-218ENST00000494646 TIAM2Q8IVF5 1701 aa12.51□□□□□ -0.41
MSH5-218ENST00000494646 DPY19L2Q6NUT2 758 aa12.51□□□□□ -0.41
MSH5-218ENST00000494646 PPP1R42Q7Z4L9 355 aa12.51□□□□□ -0.41
MSH5-218ENST00000494646 RBM46Q8TBY0 533 aaKnown RBP12.51□□□□□ -0.41
MSH5-218ENST00000494646 CFAP44Q96MT7 982 aa12.51□□□□□ -0.41
MSH5-218ENST00000494646 POTECB2RU33 542 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 ELL2O00472 640 aaPredicted RBP12.5□□□□□ -0.41
MSH5-218ENST00000494646 NTSR2O95665 410 aa12.5□□□□□ -0.41
MSH5-218ENST00000494646 VEGFAP15692 232 aaPredicted RBP12.5□□□□□ -0.41
MSH5-218ENST00000494646 CCDC93Q567U6 631 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms