RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ATP8B2P98198 1209 aa19.17■□□□□ 0.66
CCDC88B-209ENST00000494080 HSP90B2PQ58FF3 399 aa19.17■□□□□ 0.66
CCDC88B-209ENST00000494080 ZSCAN31Q96LW9 406 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-209ENST00000494080 C19orf44Q9H6X5 657 aa19.17■□□□□ 0.66
CCDC88B-209ENST00000494080 PA2G4Q9UQ80 394 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-209ENST00000494080 ZCCHC11Q5TAX3 1644 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-209ENST00000494080 CWF19L2Q2TBE0 894 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-209ENST00000494080 STK38Q15208 465 aa19.16■□□□□ 0.66
CCDC88B-209ENST00000494080 TMEM2Q9UHN6 1383 aa19.16■□□□□ 0.66
CCDC88B-209ENST00000494080 KRT32Q14532 448 aa19.16■□□□□ 0.66
CCDC88B-209ENST00000494080 TRPM2O94759 1503 aa19.16■□□□□ 0.66
CCDC88B-209ENST00000494080 SNRKQ9NRH2 765 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 NPHP3Q7Z494 1330 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 CHL1O00533 1208 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 IFIT5Q13325 482 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 ZGPATQ8N5A5 531 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 NOC3LQ8WTT2 800 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 IP6K1Q92551 441 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 ABCF2Q9UG63 623 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 PTPN14Q15678 1187 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 SPATA32Q96LK8 384 aa19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 TRMT112Q9UI30 125 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-209ENST00000494080 MAP3K5Q99683 1374 aa19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 ME1P48163 572 aa19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 SETQ01105 290 aaPredicted RBP19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 PDILTQ8N807 584 aa19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 OTUD7AQ8TE49 926 aaPredicted RBP19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 TMX3Q96JJ7 454 aa19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.14■□□□□ 0.66
CCDC88B-209ENST00000494080 PLEKHM2Q8IWE5 1019 aa19.14■□□□□ 0.65
CCDC88B-209ENST00000494080 INSRP06213 1382 aa19.14■□□□□ 0.65
CCDC88B-209ENST00000494080 KSR2Q6VAB6 950 aa19.14■□□□□ 0.65
CCDC88B-209ENST00000494080 GNL3LQ9NVN8 582 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-209ENST00000494080 GRM8O00222 908 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 RBM25P49756 843 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 UVSSAQ2YD98 709 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 METP08581 1390 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 CKAP2LQ8IYA6 745 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 FAM177A1Q8N128 213 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 TRIM34Q9BYJ4 488 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 PRDM15P57071 1507 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 EXOC5O00471 708 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 EVI5LQ96CN4 794 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 NACAP1Q9BZK3 213 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 LRP2BPQ9P2M1 347 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 CTNNA3Q9UI47 895 aa19.13■□□□□ 0.65
CCDC88B-209ENST00000494080 KDM5DQ9BY66 1539 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 LGR6Q9HBX8 967 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 GOLIM4O00461 696 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 GIMAP6Q6P9H5 292 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 TPM1P09493 284 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 ANTXR1Q9H6X2 564 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 LIMCH1Q9UPQ0 1083 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 PLEKHG3A1L390 1219 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 SAMD1Q6SPF0 538 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 ZCRB1Q8TBF4 217 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 NUP133Q8WUM0 1156 aa19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 HOOK1Q9UJC3 728 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-209ENST00000494080 TDO2P48775 406 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 ZSCAN25Q6NSZ9 544 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 MLH3Q9UHC1 1453 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 MSH6P52701 1360 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 ZNF396Q96N95 335 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 GTPBP4Q9BZE4 634 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 CWC25Q9NXE8 425 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 KDM5AP29375 1690 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 TERF1P54274 439 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 RAI14Q9P0K7 980 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 AKAP2Q9Y2D5 859 aa19.11■□□□□ 0.65
CCDC88B-209ENST00000494080 IGHMBP2P38935 993 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 TRMT1Q9NXH9 659 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 XBP1P17861 261 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 UBXN4Q92575 508 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 TCEANC2Q96MN5 208 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 SBNO1A3KN83 1393 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 SKIDA1Q1XH10 827 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 LEKR1Q6ZMV7 388 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 ESYT1Q9BSJ8 1104 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 PPFIA3O75145 1194 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 DDX46Q7L014 1031 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 AIDAQ96BJ3 306 aa19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 U3KPZ7 1027 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-209ENST00000494080 ZFYVE16Q7Z3T8 1539 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 IMMTQ16891 758 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 CALCOCO1Q9P1Z2 691 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 LMBR1LQ6UX01 489 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 LDHAL6AQ6ZMR3 332 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 PLCD3Q8N3E9 789 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 LINS1Q8NG48 757 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 KIF18AQ8NI77 898 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 AK7Q96M32 723 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 CLIP2Q9UDT6 1046 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 ZNF521Q96K83 1311 aa19.09■□□□□ 0.65
CCDC88B-209ENST00000494080 NBPF6Q5VWK0 638 aa19.08■□□□□ 0.65
CCDC88B-209ENST00000494080 NBPF4Q96M43 638 aa19.08■□□□□ 0.65
CCDC88B-209ENST00000494080 ALDH1L1O75891 902 aa19.08■□□□□ 0.64
CCDC88B-209ENST00000494080 ZNF445P59923 1031 aa19.08■□□□□ 0.64
CCDC88B-209ENST00000494080 TSR1Q2NL82 804 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-209ENST00000494080 USP48Q86UV5 1035 aa19.08■□□□□ 0.64
CCDC88B-209ENST00000494080 RNMTO43148 476 aaKnown RBP19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms