RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 SCN7AQ01118 1682 aa21.95■■□□□ 1.1
USP48-210ENST00000489108 SCN4AP35499 1836 aa21.94■■□□□ 1.1
USP48-210ENST00000489108 CAMTA2O94983 1202 aa21.94■■□□□ 1.1
USP48-210ENST00000489108 LBX1P52954 281 aa21.94■■□□□ 1.1
USP48-210ENST00000489108 ST5P78524 1137 aa21.94■■□□□ 1.1
USP48-210ENST00000489108 IL17REQ8NFR9 667 aa21.94■■□□□ 1.1
USP48-210ENST00000489108 WBP1LQ9NX94 342 aa21.94■■□□□ 1.1
USP48-210ENST00000489108 EAPPQ56P03 285 aaPredicted RBP21.93■■□□□ 1.1
USP48-210ENST00000489108 AMER1Q5JTC6 1135 aaPredicted RBP21.93■■□□□ 1.1
USP48-210ENST00000489108 C7orf43Q8WVR3 580 aa21.93■■□□□ 1.1
USP48-210ENST00000489108 DIAPH1O60610 1272 aaKnown RBP21.92■■□□□ 1.1
USP48-210ENST00000489108 TEFQ10587 303 aa21.92■■□□□ 1.1
USP48-210ENST00000489108 NPM2Q86SE8 214 aaKnown RBP21.92■■□□□ 1.1
USP48-210ENST00000489108 CLEC11AQ9Y240 323 aa21.92■■□□□ 1.1
USP48-210ENST00000489108 ARFGEF2Q9Y6D5 1785 aa21.91■■□□□ 1.1
USP48-210ENST00000489108 ZNF541Q9H0D2 1346 aa21.9■■□□□ 1.1
USP48-210ENST00000489108 CCDC93Q567U6 631 aa21.9■■□□□ 1.1
USP48-210ENST00000489108 DZIP3Q86Y13 1208 aaKnown RBP21.89■■□□□ 1.09
USP48-210ENST00000489108 FMNL2Q96PY5 1086 aa21.89■■□□□ 1.09
USP48-210ENST00000489108 ZNF277Q9NRM2 450 aaPredicted RBP21.89■■□□□ 1.09
USP48-210ENST00000489108 HACL1Q9UJ83 578 aa21.89■■□□□ 1.09
USP48-210ENST00000489108 GNAT3A8MTJ3 354 aa21.88■■□□□ 1.09
USP48-210ENST00000489108 KCNQ3O43525 872 aa21.88■■□□□ 1.09
USP48-210ENST00000489108 FKBP4Q02790 459 aaKnown RBP eCLIP21.88■■□□□ 1.09
USP48-210ENST00000489108 DEFB115Q30KQ5 88 aa21.88■■□□□ 1.09
USP48-210ENST00000489108 OLFM4Q6UX06 510 aa21.88■■□□□ 1.09
USP48-210ENST00000489108 HSPA8P11142 646 aaKnown RBP21.87■■□□□ 1.09
USP48-210ENST00000489108 EPHX2P34913 555 aa21.87■■□□□ 1.09
USP48-210ENST00000489108 PIP4K2AP48426 406 aaPredicted RBP21.87■■□□□ 1.09
USP48-210ENST00000489108 NBPF5PQ86XG9 351 aaPredicted RBP21.87■■□□□ 1.09
USP48-210ENST00000489108 CNTROBQ8N137 903 aa21.87■■□□□ 1.09
USP48-210ENST00000489108 RASSF10A6NK89 507 aa21.86■■□□□ 1.09
USP48-210ENST00000489108 SLC34A2O95436 690 aa21.86■■□□□ 1.09
USP48-210ENST00000489108 NPR1P16066 1061 aa21.86■■□□□ 1.09
USP48-210ENST00000489108 MAP1SQ66K74 1059 aaPredicted RBP21.86■■□□□ 1.09
USP48-210ENST00000489108 ABHD8Q96I13 439 aa21.86■■□□□ 1.09
USP48-210ENST00000489108 SIPA1L3O60292 1781 aaPredicted RBP21.86■■□□□ 1.09
USP48-210ENST00000489108 TRIM26Q12899 539 aaPredicted RBP21.85■■□□□ 1.09
USP48-210ENST00000489108 USP16Q9Y5T5 823 aa21.85■■□□□ 1.09
USP48-210ENST00000489108 WDR33Q9C0J8 1336 aaKnown RBP21.84■■□□□ 1.09
USP48-210ENST00000489108 PNMA8AQ86V59 439 aaPredicted RBP21.84■■□□□ 1.09
USP48-210ENST00000489108 GAS2L2Q8NHY3 880 aa21.84■■□□□ 1.09
USP48-210ENST00000489108 BCORQ6W2J9 1755 aa21.84■■□□□ 1.09
USP48-210ENST00000489108 ADAMTSL1Q8N6G6 1762 aa21.84■■□□□ 1.09
USP48-210ENST00000489108 RNF123Q5XPI4 1314 aa21.83■■□□□ 1.09
USP48-210ENST00000489108 KLRG2A4D1S0 409 aaPredicted RBP21.83■■□□□ 1.09
USP48-210ENST00000489108 CLEC4GQ6UXB4 293 aa21.83■■□□□ 1.09
USP48-210ENST00000489108 RTKN2Q8IZC4 609 aa21.83■■□□□ 1.09
USP48-210ENST00000489108 BTBD11A6QL63 1104 aa21.82■■□□□ 1.08
USP48-210ENST00000489108 FZD9O00144 591 aa21.82■■□□□ 1.08
USP48-210ENST00000489108 U2SURPO15042 1029 aaKnown RBP21.82■■□□□ 1.08
USP48-210ENST00000489108 MAP2K1Q02750 393 aaPredicted RBP21.82■■□□□ 1.08
USP48-210ENST00000489108 FAM161AQ3B820 660 aa21.82■■□□□ 1.08
USP48-210ENST00000489108 CC2D1BQ5T0F9 858 aaKnown RBP21.82■■□□□ 1.08
USP48-210ENST00000489108 SYNE4Q8N205 404 aa21.82■■□□□ 1.08
USP48-210ENST00000489108 PRAMEF22A3QJZ6 481 aa21.81■■□□□ 1.08
USP48-210ENST00000489108 IARSP41252 1262 aaKnown RBP21.81■■□□□ 1.08
USP48-210ENST00000489108 TPTE2Q6XPS3 522 aa21.81■■□□□ 1.08
USP48-210ENST00000489108 ABT1Q9ULW3 272 aaKnown RBP21.81■■□□□ 1.08
USP48-210ENST00000489108 FAM177BA6PVY3 158 aa21.8■■□□□ 1.08
USP48-210ENST00000489108 ZNF652Q9Y2D9 606 aa21.8■■□□□ 1.08
USP48-210ENST00000489108 GPC2Q8N158 579 aa21.79■■□□□ 1.08
USP48-210ENST00000489108 PCGF6Q9BYE7 350 aa21.79■■□□□ 1.08
USP48-210ENST00000489108 NIP7Q9Y221 180 aaKnown RBP eCLIP21.79■■□□□ 1.08
USP48-210ENST00000489108 CLSPNQ9HAW4 1339 aa21.79■■□□□ 1.08
USP48-210ENST00000489108 CEMIPQ8WUJ3 1361 aa21.78■■□□□ 1.08
USP48-210ENST00000489108 PER1O15534 1290 aaPredicted RBP21.78■■□□□ 1.08
USP48-210ENST00000489108 ALDH1B1P30837 517 aa21.78■■□□□ 1.08
USP48-210ENST00000489108 DDX21Q9NR30 783 aaKnown RBP eCLIP21.78■■□□□ 1.08
USP48-210ENST00000489108 FMR1Q06787 632 aaKnown RBP eCLIP21.77■■□□□ 1.08
USP48-210ENST00000489108 PHACTR3Q96KR7 559 aa21.76■■□□□ 1.07
USP48-210ENST00000489108 GJA3Q9Y6H8 435 aa21.76■■□□□ 1.07
USP48-210ENST00000489108 CCDC85CA6NKD9 419 aa21.75■■□□□ 1.07
USP48-210ENST00000489108 NBPF26B4DH59 902 aa21.75■■□□□ 1.07
USP48-210ENST00000489108 SNRPA1P09661 255 aaKnown RBP21.75■■□□□ 1.07
USP48-210ENST00000489108 CNGB1Q14028 1251 aaPredicted RBP21.75■■□□□ 1.07
USP48-210ENST00000489108 NBPF10Q6P3W6 841 aaKnown RBP21.75■■□□□ 1.07
USP48-210ENST00000489108 NBPF15Q8N660 670 aa21.75■■□□□ 1.07
USP48-210ENST00000489108 JDP2Q8WYK2 163 aa21.75■■□□□ 1.07
USP48-210ENST00000489108 COL3A1P02461 1466 aaPredicted RBP21.75■■□□□ 1.07
USP48-210ENST00000489108 PAXIP1Q6ZW49 1069 aaPredicted RBP21.74■■□□□ 1.07
USP48-210ENST00000489108 CAPNS2Q96L46 248 aa21.74■■□□□ 1.07
USP48-210ENST00000489108 KIF7Q2M1P5 1343 aa21.74■■□□□ 1.07
USP48-210ENST00000489108 GTF2E1P29083 439 aaPredicted RBP21.73■■□□□ 1.07
USP48-210ENST00000489108 EIF6P56537 245 aaKnown RBP21.73■■□□□ 1.07
USP48-210ENST00000489108 GRM1Q13255 1194 aa21.73■■□□□ 1.07
USP48-210ENST00000489108 HLFQ16534 295 aa21.73■■□□□ 1.07
USP48-210ENST00000489108 PSMD1Q99460 953 aa21.73■■□□□ 1.07
USP48-210ENST00000489108 EPS15P42566 896 aa21.72■■□□□ 1.07
USP48-210ENST00000489108 MLLT1Q03111 559 aaPredicted RBP21.72■■□□□ 1.07
USP48-210ENST00000489108 CYP4F22Q6NT55 531 aa21.72■■□□□ 1.07
USP48-210ENST00000489108 GPR101Q96P66 508 aaPredicted RBP21.72■■□□□ 1.07
USP48-210ENST00000489108 BEGAINQ9BUH8 593 aa21.72■■□□□ 1.07
USP48-210ENST00000489108 LMOD1P29536 600 aaPredicted RBP21.71■■□□□ 1.07
USP48-210ENST00000489108 PRKAR2BP31323 418 aa21.71■■□□□ 1.07
USP48-210ENST00000489108 ECE1P42892 770 aa21.71■■□□□ 1.07
USP48-210ENST00000489108 CST9Q5W186 159 aa21.71■■□□□ 1.07
USP48-210ENST00000489108 LTBP1Q14766 1721 aa21.71■■□□□ 1.07
USP48-210ENST00000489108 SNED1Q8TER0 1413 aa21.71■■□□□ 1.07
USP48-210ENST00000489108 COL4A5P29400 1685 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms