RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 MARCH6O60337 910 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 VPS53Q5VIR6 699 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 SAMD1Q6SPF0 538 aaPredicted RBP13.4□□□□□ -0.26
SMPD4-218ENST00000482171 LDHAL6AQ6ZMR3 332 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 DDX46Q7L014 1031 aaKnown RBP13.4□□□□□ -0.26
SMPD4-218ENST00000482171 LINS1Q8NG48 757 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 BTG4Q9NY30 223 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 TCEANC2Q96MN5 208 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 ZNF790Q6PG37 636 aa13.4□□□□□ -0.26
SMPD4-218ENST00000482171 ZHX1Q9UKY1 873 aaPredicted RBP13.4□□□□□ -0.26
SMPD4-218ENST00000482171 A2ML1A8K2U0 1454 aa13.4□□□□□ -0.27
SMPD4-218ENST00000482171 LRP2BPQ9P2M1 347 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 ARHGAP31Q2M1Z3 1444 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 POLR1AO95602 1720 aaPredicted RBP13.39□□□□□ -0.27
SMPD4-218ENST00000482171 KLHDC4Q8TBB5 520 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 CCDC34Q96HJ3 373 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 CEP152O94986 1710 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 NBPF7P0C2Y1 421 aaPredicted RBP13.39□□□□□ -0.27
SMPD4-218ENST00000482171 IGHMBP2P38935 993 aaKnown RBP13.39□□□□□ -0.27
SMPD4-218ENST00000482171 CCAR2Q8N163 923 aaKnown RBP13.39□□□□□ -0.27
SMPD4-218ENST00000482171 DCAF5Q96JK2 942 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 PNMA6EA0A0J9YXQ4 647 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 UBAP1LF5GYI3 381 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 PDCP20941 246 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 CBX1P83916 185 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 RAI14Q9P0K7 980 aa13.39□□□□□ -0.27
SMPD4-218ENST00000482171 TPM4P67936 248 aa13.38□□□□□ -0.27
SMPD4-218ENST00000482171 CCDC73Q6ZRK6 1079 aa13.38□□□□□ -0.27
SMPD4-218ENST00000482171 WDR33Q9C0J8 1336 aaKnown RBP13.38□□□□□ -0.27
SMPD4-218ENST00000482171 ALDH1L1O75891 902 aa13.37□□□□□ -0.27
SMPD4-218ENST00000482171 ZNF496Q96IT1 587 aaPredicted RBP13.37□□□□□ -0.27
SMPD4-218ENST00000482171 PES1O00541 588 aaKnown RBP13.37□□□□□ -0.27
SMPD4-218ENST00000482171 C8orf37Q96NL8 207 aa13.37□□□□□ -0.27
SMPD4-218ENST00000482171 GDPD2Q9HCC8 539 aa13.37□□□□□ -0.27
SMPD4-218ENST00000482171 DDX21Q9NR30 783 aaKnown RBP eCLIP13.37□□□□□ -0.27
SMPD4-218ENST00000482171 GNL3LQ9NVN8 582 aaKnown RBP13.37□□□□□ -0.27
SMPD4-218ENST00000482171 SLAIN2Q9P270 581 aa13.37□□□□□ -0.27
SMPD4-218ENST00000482171 NLRP1Q9C000 1473 aa13.37□□□□□ -0.27
SMPD4-218ENST00000482171 SAFBQ15424 915 aaKnown RBP eCLIP13.37□□□□□ -0.27
SMPD4-218ENST00000482171 SDF4Q9BRK5 362 aa13.37□□□□□ -0.27
SMPD4-218ENST00000482171 TRIM5Q9C035 493 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 SETD1BQ9UPS6 1966 aaKnown RBP13.36□□□□□ -0.27
SMPD4-218ENST00000482171 CLSTN1O94985 981 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 A1BGP04217 495 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 TDO2P48775 406 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 EVI5LQ96CN4 794 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 MADDQ8WXG6 1647 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 USP6P35125 1406 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 FAM135BQ49AJ0 1406 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
SMPD4-218ENST00000482171 SART3Q15020 963 aaKnown RBP13.36□□□□□ -0.27
SMPD4-218ENST00000482171 NUP133Q8WUM0 1156 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 BICC1Q9H694 974 aaKnown RBP13.36□□□□□ -0.27
SMPD4-218ENST00000482171 AKAP2Q9Y2D5 859 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 ANKRD18BA2A2Z9 1011 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 EIF4A1P60842 406 aaKnown RBP13.36□□□□□ -0.27
SMPD4-218ENST00000482171 HAND2P61296 217 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 SASS6Q6UVJ0 657 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 AIDAQ96BJ3 306 aa13.36□□□□□ -0.27
SMPD4-218ENST00000482171 TMEM94Q12767 1356 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 ANKRD1Q15327 319 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 DDB1Q16531 1140 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 HOMER1Q86YM7 354 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 ESYT1Q9BSJ8 1104 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 TRIM34Q9BYJ4 488 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 ZPR1O75312 459 aa13.35□□□□□ -0.27
SMPD4-218ENST00000482171 TPD52L1Q16890 204 aaPredicted RBP13.35□□□□□ -0.27
SMPD4-218ENST00000482171 RBM27Q9P2N5 1060 aaKnown RBP13.35□□□□□ -0.27
SMPD4-218ENST00000482171 IQSEC3Q9UPP2 1182 aaPredicted RBP13.35□□□□□ -0.27
SMPD4-218ENST00000482171 SOS1Q07889 1333 aaPredicted RBP13.34□□□□□ -0.27
SMPD4-218ENST00000482171 ATP6V1AP38606 617 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 HSP90AB3PQ58FF7 597 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 TEX13AQ9BXU3 409 aaPredicted RBP13.34□□□□□ -0.27
SMPD4-218ENST00000482171 NACAP1Q9BZK3 213 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 ZNF652Q9Y2D9 606 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 ATP7BP35670 1465 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 ABCA6Q8N139 1617 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 ARHGEF10O15013 1369 aa13.34□□□□□ -0.27
SMPD4-218ENST00000482171 GUCY1B3Q02153 619 aa13.33□□□□□ -0.27
SMPD4-218ENST00000482171 PIBF1Q8WXW3 757 aa13.33□□□□□ -0.27
SMPD4-218ENST00000482171 RAB11FIP4Q86YS3 637 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 CCDC82Q8N4S0 544 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 LRRC2Q9BYS8 371 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 AATKQ6ZMQ8 1374 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 GLI2P10070 1586 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 MINDY4BA8MYZ0 360 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 MAPK8IP2Q13387 824 aaPredicted RBP13.33□□□□□ -0.28
SMPD4-218ENST00000482171 KRT32Q14532 448 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 KLHL40Q2TBA0 621 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 HELBQ8NG08 1087 aaPredicted RBP13.33□□□□□ -0.28
SMPD4-218ENST00000482171 PPP1R1BQ9UD71 204 aaPredicted RBP13.33□□□□□ -0.28
SMPD4-218ENST00000482171 PPRC1Q5VV67 1664 aaKnown RBP13.33□□□□□ -0.28
SMPD4-218ENST00000482171 ZSCAN25Q6NSZ9 544 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
SMPD4-218ENST00000482171 SLC52A2Q9HAB3 445 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 USP16Q9Y5T5 823 aa13.33□□□□□ -0.28
SMPD4-218ENST00000482171 KRT85P78386 507 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 STK38Q15208 465 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 IMMTQ16891 758 aaKnown RBP13.32□□□□□ -0.28
SMPD4-218ENST00000482171 PDCL2Q8N4E4 241 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms