RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PARP2Q9UGN5 583 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 TNFRSF10AO00220 468 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 MAPK8P45983 427 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 WDR4P57081 412 aaKnown RBP8.22□□□□□ -1.09
UPF3B-203ENST00000478840 ZC3H6P61129 1189 aaKnown RBP8.22□□□□□ -1.09
UPF3B-203ENST00000478840 LAPTM4AQ15012 233 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 ALG1LQ6GMV1 187 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 C7orf43Q8WVR3 580 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 EDEM1Q92611 657 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 DUSP9Q99956 384 aaKnown RBP8.22□□□□□ -1.09
UPF3B-203ENST00000478840 KLK14Q9P0G3 267 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 USP35Q9P2H5 1018 aa8.22□□□□□ -1.09
UPF3B-203ENST00000478840 RNF144AP50876 292 aaPredicted RBP8.21□□□□□ -1.1
UPF3B-203ENST00000478840 ATP2B2Q01814 1243 aa8.21□□□□□ -1.1
UPF3B-203ENST00000478840 XPCQ01831 940 aaPredicted RBP8.21□□□□□ -1.1
UPF3B-203ENST00000478840 FOXC1Q12948 553 aa8.21□□□□□ -1.1
UPF3B-203ENST00000478840 TMEM214Q6NUQ4 689 aaKnown RBP8.21□□□□□ -1.1
UPF3B-203ENST00000478840 MEIOBQ8N635 442 aa8.21□□□□□ -1.1
UPF3B-203ENST00000478840 NIF3L1Q9GZT8 377 aa8.21□□□□□ -1.1
UPF3B-203ENST00000478840 GPC6Q9Y625 555 aaPredicted RBP8.21□□□□□ -1.1
UPF3B-203ENST00000478840 PARP3Q9Y6F1 533 aa8.21□□□□□ -1.1
UPF3B-203ENST00000478840 GDF9O60383 454 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 RPLP1P05386 114 aaKnown RBP8.2□□□□□ -1.1
UPF3B-203ENST00000478840 GTF2E1P29083 439 aaPredicted RBP8.2□□□□□ -1.1
UPF3B-203ENST00000478840 RELBQ01201 579 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 DNM1Q05193 864 aaKnown RBP8.2□□□□□ -1.1
UPF3B-203ENST00000478840 HIF1AQ16665 826 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 FBF1Q8TES7 1133 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 TOR4AQ9NXH8 423 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 FAM13BQ9NYF5 915 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 ZDHHC3Q9NYG2 299 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 PDZRN3Q9UPQ7 1066 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 BCS1LQ9Y276 419 aa8.2□□□□□ -1.1
UPF3B-203ENST00000478840 J3QL48 77 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 SORBS3O60504 671 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 TXLNAP40222 546 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 GNASQ5JWF2 1037 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 IER5Q5VY09 327 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 TREML1Q86YW5 311 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 ZNF395Q9H8N7 513 aaPredicted RBP8.19□□□□□ -1.1
UPF3B-203ENST00000478840 WWC3Q9ULE0 1092 aa8.19□□□□□ -1.1
UPF3B-203ENST00000478840 PNMA6FA0A0J9YX94 578 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 SPATA31C2B4DYI2 1134 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 TGFBR3LH3BV60 316 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 PCSK2P16519 638 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 HDLBPQ00341 1268 aaKnown RBP8.18□□□□□ -1.1
UPF3B-203ENST00000478840 Q6ZNB5 142 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 FRMD6Q96NE9 622 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 CSRNP1Q96S65 589 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 CFHR5Q9BXR6 569 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 DNAJC25Q9H1X3 360 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 MRS2Q9HD23 443 aa8.18□□□□□ -1.1
UPF3B-203ENST00000478840 METTL5Q9NRN9 209 aaKnown RBP8.18□□□□□ -1.1
UPF3B-203ENST00000478840 LCE2BO14633 110 aa8.17□□□□□ -1.1
UPF3B-203ENST00000478840 SPINT1O43278 529 aa8.17□□□□□ -1.1
UPF3B-203ENST00000478840 NEFLP07196 543 aa8.17□□□□□ -1.1
UPF3B-203ENST00000478840 SMPD1P17405 629 aa8.17□□□□□ -1.1
UPF3B-203ENST00000478840 C4orf17Q53FE4 359 aa8.17□□□□□ -1.1
UPF3B-203ENST00000478840 SREK1Q8WXA9 508 aaKnown RBP8.17□□□□□ -1.1
UPF3B-203ENST00000478840 TSEN34Q9BSV6 310 aaKnown RBP8.17□□□□□ -1.1
UPF3B-203ENST00000478840 RNF19AQ9NV58 838 aa8.17□□□□□ -1.1
UPF3B-203ENST00000478840 DMGDHQ9UI17 866 aaKnown RBP8.17□□□□□ -1.1
UPF3B-203ENST00000478840 TTC24A2A3L6 582 aaPredicted RBP8.16□□□□□ -1.1
UPF3B-203ENST00000478840 MICAL2O94851 1124 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 GNA15P30679 374 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 PSMD2Q13200 908 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 NBPF1Q3BBV0 1214 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 METTL16Q86W50 562 aaKnown RBP8.16□□□□□ -1.1
UPF3B-203ENST00000478840 CYP4X1Q8N118 509 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 NUDT16Q96DE0 195 aaKnown RBP8.16□□□□□ -1.1
UPF3B-203ENST00000478840 FAM161BQ96MY7 647 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 SETDB2Q96T68 719 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 GGNBP2Q9H3C7 697 aa8.16□□□□□ -1.1
UPF3B-203ENST00000478840 ERCC5P28715 1186 aaPredicted RBP8.15□□□□□ -1.1
UPF3B-203ENST00000478840 PLA2G4AP47712 749 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 PRR20EP86478 221 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 PRR20CP86479 221 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 PRR20DP86480 221 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 PRR20BP86481 221 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 PRR20AP86496 221 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 WDR44Q5JSH3 913 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 SLC27A3Q5K4L6 730 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 XKR5Q6UX68 686 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 GPR152Q8TDT2 470 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 DRC1Q96MC2 740 aa8.15□□□□□ -1.1
UPF3B-203ENST00000478840 EIF1AYO14602 144 aaKnown RBP8.14□□□□□ -1.11
UPF3B-203ENST00000478840 OPLAHO14841 1288 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 FANCCQ00597 558 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 RAD51AP2Q09MP3 1159 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 NAALADL2Q58DX5 795 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 TMEM87AQ8NBN3 555 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 RHPN1Q8TCX5 695 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 PIK3R5Q8WYR1 880 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 SUSD3Q96L08 255 aa8.14□□□□□ -1.11
UPF3B-203ENST00000478840 INSM2Q96T92 566 aaPredicted RBP8.14□□□□□ -1.11
UPF3B-203ENST00000478840 NRG2O14511 850 aaPredicted RBP8.13□□□□□ -1.11
UPF3B-203ENST00000478840 ORC1Q13415 861 aa8.13□□□□□ -1.11
UPF3B-203ENST00000478840 ANKIB1Q9P2G1 1089 aa8.13□□□□□ -1.11
UPF3B-203ENST00000478840 VTI1BQ9UEU0 232 aa8.13□□□□□ -1.11
UPF3B-203ENST00000478840 AK5Q9Y6K8 562 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms