RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 GNAT3A8MTJ3 354 aa23.2■■□□□ 1.3
VIM-204ENST00000478746 CAMTA2O94983 1202 aa23.2■■□□□ 1.3
VIM-204ENST00000478746 FMNL2Q96PY5 1086 aa23.2■■□□□ 1.3
VIM-204ENST00000478746 TAF1DQ9H5J8 278 aaPredicted RBP23.2■■□□□ 1.3
VIM-204ENST00000478746 AIDAQ96BJ3 306 aa23.19■■□□□ 1.3
VIM-204ENST00000478746 L3MBTL3Q96JM7 780 aaPredicted RBP23.19■■□□□ 1.3
VIM-204ENST00000478746 PCGF6Q9BYE7 350 aa23.19■■□□□ 1.3
VIM-204ENST00000478746 TMEM88BA6NKF7 163 aa23.18■■□□□ 1.3
VIM-204ENST00000478746 CTCFP49711 727 aaPredicted RBP23.18■■□□□ 1.3
VIM-204ENST00000478746 VEGFBP49765 207 aa23.18■■□□□ 1.3
VIM-204ENST00000478746 SCN7AQ01118 1682 aa23.17■■□□□ 1.3
VIM-204ENST00000478746 DZIP3Q86Y13 1208 aaKnown RBP23.17■■□□□ 1.3
VIM-204ENST00000478746 GAS2L2Q8NHY3 880 aa23.17■■□□□ 1.3
VIM-204ENST00000478746 C7orf43Q8WVR3 580 aa23.17■■□□□ 1.3
VIM-204ENST00000478746 CACNA1SQ13698 1873 aa23.16■■□□□ 1.3
VIM-204ENST00000478746 ITGBL1O95965 494 aaPredicted RBP23.16■■□□□ 1.3
VIM-204ENST00000478746 CCDC93Q567U6 631 aa23.16■■□□□ 1.3
VIM-204ENST00000478746 EAPPQ56P03 285 aaPredicted RBP23.16■■□□□ 1.3
VIM-204ENST00000478746 CLEC11AQ9Y240 323 aa23.16■■□□□ 1.3
VIM-204ENST00000478746 U2SURPO15042 1029 aaKnown RBP23.15■■□□□ 1.3
VIM-204ENST00000478746 NBPF5PQ86XG9 351 aaPredicted RBP23.15■■□□□ 1.3
VIM-204ENST00000478746 SCN4AP35499 1836 aa23.15■■□□□ 1.3
VIM-204ENST00000478746 CC2D1BQ5T0F9 858 aaKnown RBP23.14■■□□□ 1.29
VIM-204ENST00000478746 NPR1P16066 1061 aa23.13■■□□□ 1.29
VIM-204ENST00000478746 FKBP4Q02790 459 aaKnown RBP eCLIP23.13■■□□□ 1.29
VIM-204ENST00000478746 CLEC4GQ6UXB4 293 aa23.13■■□□□ 1.29
VIM-204ENST00000478746 WBP1LQ9NX94 342 aa23.13■■□□□ 1.29
VIM-204ENST00000478746 HACL1Q9UJ83 578 aa23.13■■□□□ 1.29
VIM-204ENST00000478746 BTBD11A6QL63 1104 aa23.12■■□□□ 1.29
VIM-204ENST00000478746 KCNQ3O43525 872 aa23.12■■□□□ 1.29
VIM-204ENST00000478746 ZNF277Q9NRM2 450 aaPredicted RBP23.12■■□□□ 1.29
VIM-204ENST00000478746 USP16Q9Y5T5 823 aa23.12■■□□□ 1.29
VIM-204ENST00000478746 LBX1P52954 281 aa23.11■■□□□ 1.29
VIM-204ENST00000478746 ARFGEF2Q9Y6D5 1785 aa23.11■■□□□ 1.29
VIM-204ENST00000478746 ZNF541Q9H0D2 1346 aa23.1■■□□□ 1.29
VIM-204ENST00000478746 PER1O15534 1290 aaPredicted RBP23.1■■□□□ 1.29
VIM-204ENST00000478746 EPHX2P34913 555 aa23.1■■□□□ 1.29
VIM-204ENST00000478746 PIP4K2AP48426 406 aaPredicted RBP23.1■■□□□ 1.29
VIM-204ENST00000478746 DEFB115Q30KQ5 88 aa23.1■■□□□ 1.29
VIM-204ENST00000478746 TPTE2Q6XPS3 522 aa23.1■■□□□ 1.29
VIM-204ENST00000478746 PNMA8AQ86V59 439 aaPredicted RBP23.1■■□□□ 1.29
VIM-204ENST00000478746 RTKN2Q8IZC4 609 aa23.1■■□□□ 1.29
VIM-204ENST00000478746 ZNF652Q9Y2D9 606 aa23.1■■□□□ 1.29
VIM-204ENST00000478746 KLRG2A4D1S0 409 aaPredicted RBP23.09■■□□□ 1.29
VIM-204ENST00000478746 CNTROBQ8N137 903 aa23.09■■□□□ 1.29
VIM-204ENST00000478746 SIPA1L3O60292 1781 aaPredicted RBP23.09■■□□□ 1.29
VIM-204ENST00000478746 OLFM4Q6UX06 510 aa23.08■■□□□ 1.29
VIM-204ENST00000478746 KIF7Q2M1P5 1343 aa23.08■■□□□ 1.28
VIM-204ENST00000478746 CEMIPQ8WUJ3 1361 aa23.07■■□□□ 1.28
VIM-204ENST00000478746 RASSF10A6NK89 507 aa23.06■■□□□ 1.28
VIM-204ENST00000478746 ALDH1B1P30837 517 aa23.06■■□□□ 1.28
VIM-204ENST00000478746 MAP1SQ66K74 1059 aaPredicted RBP23.06■■□□□ 1.28
VIM-204ENST00000478746 SYNE4Q8N205 404 aa23.06■■□□□ 1.28
VIM-204ENST00000478746 NIP7Q9Y221 180 aaKnown RBP eCLIP23.06■■□□□ 1.28
VIM-204ENST00000478746 BCORQ6W2J9 1755 aa23.06■■□□□ 1.28
VIM-204ENST00000478746 RNF123Q5XPI4 1314 aa23.06■■□□□ 1.28
VIM-204ENST00000478746 PRAMEF22A3QJZ6 481 aa23.05■■□□□ 1.28
VIM-204ENST00000478746 FAM177BA6PVY3 158 aa23.05■■□□□ 1.28
VIM-204ENST00000478746 FZD9O00144 591 aa23.05■■□□□ 1.28
VIM-204ENST00000478746 SNRPA1P09661 255 aaKnown RBP23.05■■□□□ 1.28
VIM-204ENST00000478746 IARSP41252 1262 aaKnown RBP23.05■■□□□ 1.28
VIM-204ENST00000478746 CNGB1Q14028 1251 aaPredicted RBP23.05■■□□□ 1.28
VIM-204ENST00000478746 PHACTR3Q96KR7 559 aa23.05■■□□□ 1.28
VIM-204ENST00000478746 MAP2K1Q02750 393 aaPredicted RBP23.04■■□□□ 1.28
VIM-204ENST00000478746 GPC2Q8N158 579 aa23.04■■□□□ 1.28
VIM-204ENST00000478746 WDR33Q9C0J8 1336 aaKnown RBP23.04■■□□□ 1.28
VIM-204ENST00000478746 HSPA8P11142 646 aaKnown RBP23.03■■□□□ 1.28
VIM-204ENST00000478746 ABT1Q9ULW3 272 aaKnown RBP23.03■■□□□ 1.28
VIM-204ENST00000478746 GTF2E1P29083 439 aaPredicted RBP23.02■■□□□ 1.28
VIM-204ENST00000478746 JDP2Q8WYK2 163 aa23.02■■□□□ 1.28
VIM-204ENST00000478746 ABHD8Q96I13 439 aa23.02■■□□□ 1.28
VIM-204ENST00000478746 COL3A1P02461 1466 aaPredicted RBP23.02■■□□□ 1.28
VIM-204ENST00000478746 RGL2O15211 777 aa23.01■■□□□ 1.27
VIM-204ENST00000478746 PRKAR2BP31323 418 aa23.01■■□□□ 1.27
VIM-204ENST00000478746 ADAMTSL1Q8N6G6 1762 aa23■■□□□ 1.27
VIM-204ENST00000478746 NBPF26B4DH59 902 aa23■■□□□ 1.27
VIM-204ENST00000478746 NBPF10Q6P3W6 841 aaKnown RBP23■■□□□ 1.27
VIM-204ENST00000478746 NBPF15Q8N660 670 aa23■■□□□ 1.27
VIM-204ENST00000478746 RTF1Q92541 710 aaKnown RBP23■■□□□ 1.27
VIM-204ENST00000478746 EIF6P56537 245 aaKnown RBP22.99■■□□□ 1.27
VIM-204ENST00000478746 PSMD1Q99460 953 aa22.99■■□□□ 1.27
VIM-204ENST00000478746 DDX21Q9NR30 783 aaKnown RBP eCLIP22.99■■□□□ 1.27
VIM-204ENST00000478746 GJA3Q9Y6H8 435 aa22.99■■□□□ 1.27
VIM-204ENST00000478746 HLFQ16534 295 aa22.98■■□□□ 1.27
VIM-204ENST00000478746 RSPH6AQ9H0K4 717 aa22.98■■□□□ 1.27
VIM-204ENST00000478746 LMOD1P29536 600 aaPredicted RBP22.97■■□□□ 1.27
VIM-204ENST00000478746 MCM10Q7L590 875 aa22.97■■□□□ 1.27
VIM-204ENST00000478746 CC2D2BQ6DHV5 1058 aa22.96■■□□□ 1.27
VIM-204ENST00000478746 BEGAINQ9BUH8 593 aa22.96■■□□□ 1.27
VIM-204ENST00000478746 NPC1L1Q9UHC9 1359 aa22.96■■□□□ 1.27
VIM-204ENST00000478746 FAM161AQ3B820 660 aa22.95■■□□□ 1.26
VIM-204ENST00000478746 PAXIP1Q6ZW49 1069 aaPredicted RBP22.95■■□□□ 1.26
VIM-204ENST00000478746 CFAP53Q96M91 514 aa22.95■■□□□ 1.26
VIM-204ENST00000478746 NYXQ9GZU5 481 aa22.95■■□□□ 1.26
VIM-204ENST00000478746 SLC34A2O95436 690 aa22.94■■□□□ 1.26
VIM-204ENST00000478746 ECE1P42892 770 aa22.94■■□□□ 1.26
VIM-204ENST00000478746 CAPNS2Q96L46 248 aa22.94■■□□□ 1.26
VIM-204ENST00000478746 NUDCQ9Y266 331 aa22.94■■□□□ 1.26
VIM-204ENST00000478746 EPS15P42566 896 aa22.93■■□□□ 1.26
VIM-204ENST00000478746 FMR1Q06787 632 aaKnown RBP eCLIP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms