RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ZNF219Q9P2Y4 722 aaPredicted RBP16.97■□□□□ 0.31
SKA3-206ENST00000475251 COL11A2P13942 1736 aaPredicted RBP16.96■□□□□ 0.31
SKA3-206ENST00000475251 MASTLQ96GX5 879 aa16.96■□□□□ 0.31
SKA3-206ENST00000475251 PRPF40BQ6NWY9 871 aaKnown RBP16.95■□□□□ 0.3
SKA3-206ENST00000475251 KIF7Q2M1P5 1343 aa16.95■□□□□ 0.3
SKA3-206ENST00000475251 ARFGEF2Q9Y6D5 1785 aa16.94■□□□□ 0.3
SKA3-206ENST00000475251 U2SURPO15042 1029 aaKnown RBP16.94■□□□□ 0.3
SKA3-206ENST00000475251 SRGNP10124 158 aa16.94■□□□□ 0.3
SKA3-206ENST00000475251 CC2D1BQ5T0F9 858 aaKnown RBP16.94■□□□□ 0.3
SKA3-206ENST00000475251 IL17REQ8NFR9 667 aa16.94■□□□□ 0.3
SKA3-206ENST00000475251 ZNF652Q9Y2D9 606 aa16.94■□□□□ 0.3
SKA3-206ENST00000475251 SIPA1L3O60292 1781 aaPredicted RBP16.94■□□□□ 0.3
SKA3-206ENST00000475251 DDNO94850 711 aaPredicted RBP16.93■□□□□ 0.3
SKA3-206ENST00000475251 CAMTA2O94983 1202 aa16.93■□□□□ 0.3
SKA3-206ENST00000475251 LDHDQ86WU2 507 aa16.93■□□□□ 0.3
SKA3-206ENST00000475251 DZIP3Q86Y13 1208 aaKnown RBP16.93■□□□□ 0.3
SKA3-206ENST00000475251 CCDC24Q8N4L8 307 aa16.93■□□□□ 0.3
SKA3-206ENST00000475251 BCORQ6W2J9 1755 aa16.92■□□□□ 0.3
SKA3-206ENST00000475251 SCN4AP35499 1836 aa16.92■□□□□ 0.3
SKA3-206ENST00000475251 PER1O15534 1290 aaPredicted RBP16.92■□□□□ 0.3
SKA3-206ENST00000475251 CCDC93Q567U6 631 aa16.92■□□□□ 0.3
SKA3-206ENST00000475251 CLEC4GQ6UXB4 293 aa16.92■□□□□ 0.3
SKA3-206ENST00000475251 L3MBTL3Q96JM7 780 aaPredicted RBP16.92■□□□□ 0.3
SKA3-206ENST00000475251 MKRN1Q9UHC7 482 aaKnown RBP16.92■□□□□ 0.3
SKA3-206ENST00000475251 SLX4Q8IY92 1834 aa16.91■□□□□ 0.3
SKA3-206ENST00000475251 CEMIPQ8WUJ3 1361 aa16.91■□□□□ 0.3
SKA3-206ENST00000475251 NPC1L1Q9UHC9 1359 aa16.91■□□□□ 0.3
SKA3-206ENST00000475251 BTBD11A6QL63 1104 aa16.91■□□□□ 0.3
SKA3-206ENST00000475251 A1BGP04217 495 aa16.91■□□□□ 0.3
SKA3-206ENST00000475251 SLC4A2P04920 1241 aa16.91■□□□□ 0.3
SKA3-206ENST00000475251 NBPF5PQ86XG9 351 aaPredicted RBP16.91■□□□□ 0.3
SKA3-206ENST00000475251 COL3A1P02461 1466 aaPredicted RBP16.91■□□□□ 0.3
SKA3-206ENST00000475251 CACNA1SQ13698 1873 aa16.9■□□□□ 0.3
SKA3-206ENST00000475251 CNTNAP1P78357 1384 aa16.9■□□□□ 0.3
SKA3-206ENST00000475251 RGL2O15211 777 aa16.9■□□□□ 0.3
SKA3-206ENST00000475251 NPR1P16066 1061 aa16.89■□□□□ 0.29
SKA3-206ENST00000475251 AIDAQ96BJ3 306 aa16.89■□□□□ 0.29
SKA3-206ENST00000475251 POTEIP0CG38 1075 aa16.88■□□□□ 0.29
SKA3-206ENST00000475251 POTEJP0CG39 1038 aa16.88■□□□□ 0.29
SKA3-206ENST00000475251 FKBP4Q02790 459 aaKnown RBP eCLIP16.88■□□□□ 0.29
SKA3-206ENST00000475251 TPTE2Q6XPS3 522 aa16.88■□□□□ 0.29
SKA3-206ENST00000475251 RTKN2Q8IZC4 609 aa16.88■□□□□ 0.29
SKA3-206ENST00000475251 CCER1Q8TC90 406 aaPredicted RBP16.88■□□□□ 0.29
SKA3-206ENST00000475251 TAF1DQ9H5J8 278 aaPredicted RBP16.88■□□□□ 0.29
SKA3-206ENST00000475251 PRDM10Q9NQV6 1147 aa16.88■□□□□ 0.29
SKA3-206ENST00000475251 PASKQ96RG2 1323 aa16.88■□□□□ 0.29
SKA3-206ENST00000475251 TMEM88BA6NKF7 163 aa16.87■□□□□ 0.29
SKA3-206ENST00000475251 CFAP53Q96M91 514 aa16.87■□□□□ 0.29
SKA3-206ENST00000475251 KLRG2A4D1S0 409 aaPredicted RBP16.86■□□□□ 0.29
SKA3-206ENST00000475251 SNRPA1P09661 255 aaKnown RBP16.86■□□□□ 0.29
SKA3-206ENST00000475251 CTCFP49711 727 aaPredicted RBP16.86■□□□□ 0.29
SKA3-206ENST00000475251 PNMA8AQ86V59 439 aaPredicted RBP16.86■□□□□ 0.29
SKA3-206ENST00000475251 C7orf43Q8WVR3 580 aa16.86■□□□□ 0.29
SKA3-206ENST00000475251 RTF1Q92541 710 aaKnown RBP16.86■□□□□ 0.29
SKA3-206ENST00000475251 HACL1Q9UJ83 578 aa16.86■□□□□ 0.29
SKA3-206ENST00000475251 ALDH1B1P30837 517 aa16.85■□□□□ 0.29
SKA3-206ENST00000475251 PRKAR2BP31323 418 aa16.85■□□□□ 0.29
SKA3-206ENST00000475251 EAPPQ56P03 285 aaPredicted RBP16.85■□□□□ 0.29
SKA3-206ENST00000475251 CLEC11AQ9Y240 323 aa16.85■□□□□ 0.29
SKA3-206ENST00000475251 NUDCQ9Y266 331 aa16.85■□□□□ 0.29
SKA3-206ENST00000475251 USP16Q9Y5T5 823 aa16.85■□□□□ 0.29
SKA3-206ENST00000475251 U3KPZ7 1027 aaPredicted RBP16.85■□□□□ 0.29
SKA3-206ENST00000475251 FOXN1O15353 648 aa16.84■□□□□ 0.29
SKA3-206ENST00000475251 KCNQ3O43525 872 aa16.84■□□□□ 0.29
SKA3-206ENST00000475251 NIP7Q9Y221 180 aaKnown RBP eCLIP16.84■□□□□ 0.29
SKA3-206ENST00000475251 GTF2E1P29083 439 aaPredicted RBP16.83■□□□□ 0.28
SKA3-206ENST00000475251 EPHX2P34913 555 aa16.83■□□□□ 0.28
SKA3-206ENST00000475251 RSPH6AQ9H0K4 717 aa16.83■□□□□ 0.28
SKA3-206ENST00000475251 ZNF277Q9NRM2 450 aaPredicted RBP16.83■□□□□ 0.28
SKA3-206ENST00000475251 ZNF541Q9H0D2 1346 aa16.82■□□□□ 0.28
SKA3-206ENST00000475251 ITGBL1O95965 494 aaPredicted RBP16.82■□□□□ 0.28
SKA3-206ENST00000475251 VEGFBP49765 207 aa16.82■□□□□ 0.28
SKA3-206ENST00000475251 GPC2Q8N158 579 aa16.82■□□□□ 0.28
SKA3-206ENST00000475251 PHACTR3Q96KR7 559 aa16.82■□□□□ 0.28
SKA3-206ENST00000475251 FZD9O00144 591 aa16.81■□□□□ 0.28
SKA3-206ENST00000475251 IARSP41252 1262 aaKnown RBP16.81■□□□□ 0.28
SKA3-206ENST00000475251 PIP4K2AP48426 406 aaPredicted RBP16.81■□□□□ 0.28
SKA3-206ENST00000475251 CNGB1Q14028 1251 aaPredicted RBP16.81■□□□□ 0.28
SKA3-206ENST00000475251 CC2D2BQ6DHV5 1058 aa16.81■□□□□ 0.28
SKA3-206ENST00000475251 JDP2Q8WYK2 163 aa16.81■□□□□ 0.28
SKA3-206ENST00000475251 ADAMTSL1Q8N6G6 1762 aa16.8■□□□□ 0.28
SKA3-206ENST00000475251 HTATSF1O43719 755 aaKnown RBP16.8■□□□□ 0.28
SKA3-206ENST00000475251 GRIPAP1Q4V328 841 aa16.8■□□□□ 0.28
SKA3-206ENST00000475251 NYXQ9GZU5 481 aa16.8■□□□□ 0.28
SKA3-206ENST00000475251 WBP1LQ9NX94 342 aa16.8■□□□□ 0.28
SKA3-206ENST00000475251 RNF123Q5XPI4 1314 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 PRAMEF22A3QJZ6 481 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 RASSF10A6NK89 507 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 MAP2K1Q02750 393 aaPredicted RBP16.79■□□□□ 0.28
SKA3-206ENST00000475251 DEFB115Q30KQ5 88 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 CNTROBQ8N137 903 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 SYNE4Q8N205 404 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 PSMD1Q99460 953 aa16.79■□□□□ 0.28
SKA3-206ENST00000475251 FAM177BA6PVY3 158 aa16.78■□□□□ 0.28
SKA3-206ENST00000475251 U2AF1L5P0DN76 240 aaPredicted RBP16.78■□□□□ 0.28
SKA3-206ENST00000475251 LMOD1P29536 600 aaPredicted RBP16.78■□□□□ 0.28
SKA3-206ENST00000475251 EIF6P56537 245 aaKnown RBP16.78■□□□□ 0.28
SKA3-206ENST00000475251 U2AF1Q01081 240 aaKnown RBP eCLIP16.78■□□□□ 0.28
SKA3-206ENST00000475251 MCM10Q7L590 875 aa16.78■□□□□ 0.28
SKA3-206ENST00000475251 NBPF26B4DH59 902 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms